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Protein

RNA binding motif protein, X-linked-like-1

Gene

Rbmxl1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

RNA-binding protein which may be involved in pre-mRNA splicing.By similarity

GO - Molecular functioni

  • chromatin binding Source: UniProtKB
  • core promoter binding Source: UniProtKB
  • mRNA binding Source: UniProtKB
  • RNA binding Source: UniProtKB

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing, mRNA splicing

Names & Taxonomyi

Protein namesi
Recommended name:
RNA binding motif protein, X-linked-like-1
Alternative name(s):
Heterogeneous nuclear ribonucleoprotein G-like 1
RNA binding motif protein, X chromosome retrogene
Gene namesi
Name:Rbmxl1
Synonyms:Rbmxrt
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 8

Organism-specific databases

MGIiMGI:1343045 Rbmxl1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004080061 – 388RNA binding motif protein, X-linked-like-1Add BLAST388

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Cross-linki80Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei88PhosphoserineBy similarity1
Modified residuei122Asymmetric dimethylarginine; alternateCombined sources1
Modified residuei122Omega-N-methylarginine; alternateCombined sources1
Modified residuei141Omega-N-methylarginineCombined sources1

Keywords - PTMi

Isopeptide bond, Methylation, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDiQ91VM5
MaxQBiQ91VM5
PaxDbiQ91VM5
PeptideAtlasiQ91VM5
PRIDEiQ91VM5

PTM databases

iPTMnetiQ91VM5
PhosphoSitePlusiQ91VM5

Expressioni

Gene expression databases

BgeeiENSMUSG00000037070
GenevisibleiQ91VM5 MM

Interactioni

Protein-protein interaction databases

BioGridi202825, 3 interactors
IntActiQ91VM5, 4 interactors
MINTiQ91VM5
STRINGi10090.ENSMUSP00000048153

Structurei

3D structure databases

ProteinModelPortaliQ91VM5
SMRiQ91VM5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 86RRMPROSITE-ProRule annotationAdd BLAST79

Phylogenomic databases

eggNOGiENOG410IHG3 Eukaryota
ENOG4111GI6 LUCA
GeneTreeiENSGT00710000106295
HOGENOMiHOG000276235
HOVERGENiHBG063314
InParanoidiQ91VM5
KOiK12885
OMAiYPDERDM
OrthoDBiEOG091G13K0
TreeFamiTF331833

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR012604 RBM1CTR
IPR000504 RRM_dom
IPR003954 RRM_dom_euk
PfamiView protein in Pfam
PF08081 RBM1CTR, 1 hit
PF00076 RRM_1, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 1 hit
SM00361 RRM_1, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit

Sequencei

Sequence statusi: Complete.

Q91VM5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVEADRPGKL FIGGLNTETN EKALEAVFGK YGRIVEILLM KDRETNKSRG
60 70 80 90 100
FAFVTFESPA DAKDAARDMN GKSLDGKAIK VEQATKPSFE SGRRGPPPPP
110 120 130 140 150
RSRGPPRGLR GGSGGTRGPP SRGGYMDDGG YSMNFNMSSS RGPLPVKRGP
160 170 180 190 200
PPRSGGPPPK RSTPSGPVRS SSGMGGRTPV SRGRDSYGGP PRREPLPSRR
210 220 230 240 250
DVYLSPRDDG YSTKDSYSSR DYPSSRDTRD YAPPPRDYTY RDYSHSSSRD
260 270 280 290 300
DYPSRGYGDR DGYGRDRDYS DHPSGGSYRD SYESYGNSRS APPTRGPPPS
310 320 330 340 350
YGGSSRYDDY SSSRDGYGGS RDSYSSSRSD LYSSGRDRVG RQERGLPPSM
360 370 380
ERGYPPPRDS YSSSSRGAPR GGGRGGSRSD RGGGRSRY
Length:388
Mass (Da):42,162
Last modified:December 1, 2001 - v1
Checksum:iF4532F545E431A59
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti38L → I in AAB86639 (PubMed:9457683).Curated1
Sequence conflicti56F → L in AAB86639 (PubMed:9457683).Curated1
Sequence conflicti88S → F in AAB86639 (PubMed:9457683).Curated1
Sequence conflicti232A → T in AAB86639 (PubMed:9457683).Curated1
Sequence conflicti244S → C in AAB86639 (PubMed:9457683).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF031568 mRNA Translation: AAB86639.1
AK041927 mRNA Translation: BAC31099.1
BC011441 mRNA Translation: AAH11441.1
BC089350 mRNA Translation: AAH89350.1
CCDSiCCDS22430.1
RefSeqiNP_001239018.1, NM_001252089.1
NP_033059.2, NM_009033.2
XP_006530838.1, XM_006530775.2
XP_006530839.1, XM_006530776.2
UniGeneiMm.24718

Genome annotation databases

EnsembliENSMUST00000049245; ENSMUSP00000048153; ENSMUSG00000037070
ENSMUST00000211719; ENSMUSP00000147384; ENSMUSG00000037070
GeneIDi19656
KEGGimmu:19656
UCSCiuc009mhz.1 mouse

Similar proteinsi

Entry informationi

Entry nameiRMXL1_MOUSE
AccessioniPrimary (citable) accession number: Q91VM5
Secondary accession number(s): O35479
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 3, 2011
Last sequence update: December 1, 2001
Last modified: March 28, 2018
This is version 133 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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