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Q91V10

- VSX1_MOUSE

UniProt

Q91V10 - VSX1_MOUSE

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Protein
Visual system homeobox 1
Gene
Vsx1, Rinx
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Binds to the 37-bp core of the locus control region (LCR) of the red/green visual pigment gene cluster. May regulate the activity of the LCR and the cone opsin genes at earlier stages of development By similarity.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi171 – 23060Homeobox
Add
BLAST

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. neuron development Source: MGI
  2. neuron maturation Source: MGI
  3. response to stimulus Source: UniProtKB-KW
  4. retinal bipolar neuron differentiation Source: MGI
  5. transcription, DNA-templated Source: UniProtKB-KW
  6. visual perception Source: MGI
Complete GO annotation...

Keywords - Molecular functioni

Developmental protein

Keywords - Biological processi

Sensory transduction, Transcription, Transcription regulation, Vision

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Visual system homeobox 1
Alternative name(s):
Homeodomain protein RINX
Retinal inner nuclear layer homeobox protein
Transcription factor VSX1
Gene namesi
Name:Vsx1
Synonyms:Rinx
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 2

Organism-specific databases

MGIiMGI:1890816. Vsx1.

Subcellular locationi

Nucleus By similarity

GO - Cellular componenti

  1. nucleus Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 363363Visual system homeobox 1
PRO_0000049356Add
BLAST

Proteomic databases

PRIDEiQ91V10.

PTM databases

PhosphoSiteiQ91V10.

Expressioni

Tissue specificityi

In the adult, expressed exclusively in the cells of the neural retina with expression restricted to postnatal cone bipolar interneurons.

Developmental stagei

Expressed at P5, solely within the inner nuclear layer (INL) of the central neuroretina. By days P6 and P7, expression expands peripherally during neurogenesis. By P12, expression is restricted to the outer margin of the INL and reaches the outer periphery of the neuroretina.

Gene expression databases

ArrayExpressiQ91V10.
BgeeiQ91V10.
CleanExiMM_VSX1.
GenevestigatoriQ91V10.

Interactioni

Protein-protein interaction databases

BioGridi227900. 1 interaction.
STRINGi10090.ENSMUSP00000039088.

Structurei

3D structure databases

ProteinModelPortaliQ91V10.
SMRiQ91V10. Positions 178-227.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini231 – 28353CVC
Add
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi31 – 388Octapeptide motif
Motifi168 – 1736Nuclear localization signal Reviewed prediction

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi44 – 12784Pro-rich
Add
BLAST
Compositional biasi80 – 9314Gly/Leu-rich
Add
BLAST
Compositional biasi142 – 15211Asp/Glu-rich (acidic)
Add
BLAST

Sequence similaritiesi

Belongs to the paired homeobox family.
Contains 1 CVC domain.

Keywords - Domaini

Homeobox

Phylogenomic databases

eggNOGiNOG237888.
GeneTreeiENSGT00750000117223.
HOGENOMiHOG000115909.
HOVERGENiHBG036251.
InParanoidiQ91V10.
KOiK09335.
OMAiWGSDHLK.
OrthoDBiEOG76474B.
PhylomeDBiQ91V10.
TreeFamiTF350743.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR023339. CVC.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF00046. Homeobox. 1 hit.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS51496. CVC. 1 hit.
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q91V10-1 [UniParc]FASTAAdd to Basket

« Hide

MTGRDGLSDA RSRSRALAPG CPPTGSRLRS FAINDLLGLE ADLPTPAEPG    50
LRSNSGDPAE AIGSGPGPGP GLCGSCPARG ALPLGLGLLC GFGAQPPSAA 100
AAARARCLLL ADLRLLPSAG PEPAVAQGPV HPPPALGSQQ RSESVSTSDG 150
DSPSEEKNDP KMSLILGKRK KRRHRTVFTA HQLEELEKAF GEAHYPDVYA 200
REMLAAKTEL PEDRIQVWFQ NRRAKWRKRE KRWGGSSVMA EYGLYGAMVR 250
HCIPLPDSVL NSADSLQGSC APWLLGMHKK STGMRKPESE DKLAGLWEFD 300
HLKKGANKDE DGPERGPDET TQNPENSLED VAIDLSSSSR QETKKMPPGS 350
STQLPQPPQV GAS 363
Length:363
Mass (Da):38,755
Last modified:December 1, 2001 - v1
Checksum:iE250D452C77228C2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY056825 mRNA. Translation: AAL11431.1.
AF395732 mRNA. Translation: AAL08947.1.
AF391757 Genomic DNA. Translation: AAL09584.1.
AF391758 mRNA. Translation: AAL09585.1.
BC057647 mRNA. Translation: AAH57647.1.
CCDSiCCDS16860.1.
PIRiJC7750.
RefSeqiNP_473409.1. NM_054068.2.
UniGeneiMm.207061.

Genome annotation databases

EnsembliENSMUST00000046095; ENSMUSP00000039088; ENSMUSG00000033080.
GeneIDi114889.
KEGGimmu:114889.
UCSCiuc008muh.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY056825 mRNA. Translation: AAL11431.1 .
AF395732 mRNA. Translation: AAL08947.1 .
AF391757 Genomic DNA. Translation: AAL09584.1 .
AF391758 mRNA. Translation: AAL09585.1 .
BC057647 mRNA. Translation: AAH57647.1 .
CCDSi CCDS16860.1.
PIRi JC7750.
RefSeqi NP_473409.1. NM_054068.2.
UniGenei Mm.207061.

3D structure databases

ProteinModelPortali Q91V10.
SMRi Q91V10. Positions 178-227.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 227900. 1 interaction.
STRINGi 10090.ENSMUSP00000039088.

PTM databases

PhosphoSitei Q91V10.

Proteomic databases

PRIDEi Q91V10.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000046095 ; ENSMUSP00000039088 ; ENSMUSG00000033080 .
GeneIDi 114889.
KEGGi mmu:114889.
UCSCi uc008muh.2. mouse.

Organism-specific databases

CTDi 30813.
MGIi MGI:1890816. Vsx1.

Phylogenomic databases

eggNOGi NOG237888.
GeneTreei ENSGT00750000117223.
HOGENOMi HOG000115909.
HOVERGENi HBG036251.
InParanoidi Q91V10.
KOi K09335.
OMAi WGSDHLK.
OrthoDBi EOG76474B.
PhylomeDBi Q91V10.
TreeFami TF350743.

Miscellaneous databases

NextBioi 368909.
PROi Q91V10.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q91V10.
Bgeei Q91V10.
CleanExi MM_VSX1.
Genevestigatori Q91V10.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
InterProi IPR023339. CVC.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
[Graphical view ]
Pfami PF00046. Homeobox. 1 hit.
[Graphical view ]
SMARTi SM00389. HOX. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS51496. CVC. 1 hit.
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Vsx1, a rapidly evolving paired-like homeobox gene expressed in cone bipolar cells."
    Chow R.L., Snow B., Novak J., Looser J., Freund C., Vidgen D., Ploder L., McInnes R.R.
    Mech. Dev. 109:315-322(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: BALB/c.
    Tissue: Retina.
  2. "Isolation and characterization of Vsx1, a novel mouse CVC paired-like homeobox gene expressed during embryogenesis and in the retina."
    Ohtoshi A., Justice M.J., Behringer R.R.
    Biochem. Biophys. Res. Commun. 286:133-140(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: Swiss.
  3. "Expression of rinx/vsx1 during postnatal eye development in cone-bipolar, differentiating ganglion, and lens fiber cells."
    Hayashi T., Huang J., Deeb S.S.
    Jpn. J. Ophthalmol. 49:93-105(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 129/SvJ.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Eye.

Entry informationi

Entry nameiVSX1_MOUSE
AccessioniPrimary (citable) accession number: Q91V10
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 8, 2002
Last sequence update: December 1, 2001
Last modified: July 9, 2014
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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