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Protein

Probable DNA-directed RNA polymerase subunit 343L

Gene

IIV6-343L

Organism
Invertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Component of the DNA-dependent RNA polymerase that catalyzes the transcription in the cytoplasm of viral DNA into RNA using the four ribonucleoside triphosphates as substrates.By similarity

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. DNA-directed RNA polymerase activity Source: UniProtKB-KW

GO - Biological processi

  1. transcription, DNA-templated Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, Transferase

Keywords - Biological processi

Transcription

Names & Taxonomyi

Protein namesi
Recommended name:
Probable DNA-directed RNA polymerase subunit 343L (EC:2.7.7.6)
Gene namesi
ORF Names:IIV6-343L
OrganismiInvertebrate iridescent virus 6 (IIV-6) (Chilo iridescent virus)
Taxonomic identifieri176652 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stageIridoviridaeIridovirus
Virus hostiAcheta domesticus (House cricket) [TaxID: 6997]
Chilo suppressalis (striped riceborer) [TaxID: 168631]
Gryllus bimaculatus (Two-spotted cricket) [TaxID: 6999]
Gryllus campestris [TaxID: 58607]
Spodoptera frugiperda (Fall armyworm) [TaxID: 7108]
ProteomesiUP000001359: Genome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymerase

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 462462Probable DNA-directed RNA polymerase subunit 343LPRO_0000377496Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ91FI1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi41 – 444Poly-Lys

Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family.Curated

Family and domain databases

InterProiIPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q91FI1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MELKNMELKR KLTINEINFI VDFIQPRPYI PPDIENAIIF KKKKGIIDQL
60 70 80 90 100
VTIEIYESLI PKLKEEIEKQ YVNSLIDPGE CVGIIGAQSM GEYSTQATLN
110 120 130 140 150
TFHVAGVDTG SSTGVSRFQD LINASKTVKI DNISLFFKPL FVKKNITELR
160 170 180 190 200
KLVASKLIEV KLSHLMITSV IVKTEEISQY RQEIESCIEL YNDEHFNYED
210 220 230 240 250
YEFCLKITLS RELLLKHRLH PSVIKNKLEE YNNDCKYAFL PISSQQILFF
260 270 280 290 300
IFIYVNTDEC IEKIIQDLMD KKICGVDGII RYDFKRKDLF DDEWYIETTG
310 320 330 340 350
GSFSNINCLA DIFDLTKTKT TSIWDLYNTF GIEATKQFLI QELKTVMDGV
360 370 380 390 400
DICHIKLLVE RMTYSGTIEP ITRYTMRNDE SPLSRASFEE SFETFLKAAK
410 420 430 440 450
FKEIEPFTGV SASVIGGKKT EVGTYMCDIL IDMEKLNLGD LKTIEDDDEY
460
DYEDDGDLVY VE
Length:462
Mass (Da):53,326
Last modified:December 1, 2001 - v1
Checksum:iABC0DFF40946804B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF303741 Genomic DNA. Translation: AAK82204.1.
RefSeqiNP_149806.1. NC_003038.1.

Genome annotation databases

GeneIDi1733090.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF303741 Genomic DNA. Translation: AAK82204.1.
RefSeqiNP_149806.1. NC_003038.1.

3D structure databases

ProteinModelPortaliQ91FI1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1733090.

Family and domain databases

InterProiIPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the first complete DNA sequence of an invertebrate iridovirus: coding strategy of the genome of Chilo iridescent virus."
    Jakob N.J., Mueller K., Bahr U., Darai G.
    Virology 286:182-196(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "Comparative genomic analysis of the family Iridoviridae: re-annotating and defining the core set of iridovirus genes."
    Eaton H.E., Metcalf J., Penny E., Tcherepanov V., Upton C., Brunetti C.R.
    Virol. J. 4:11-11(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.

Entry informationi

Entry namei343L_IIV6
AccessioniPrimary (citable) accession number: Q91FI1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 16, 2009
Last sequence update: December 1, 2001
Last modified: January 7, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.