Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q91D83 (CAPSD_SJNNV) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Protein attributes

Sequence length340 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Capsid protein alpha self-assembles to form an icosahedral procapsid with a T=3 symmetry, about 30 nm in diameter, and consisting of 60 capsid proteins trimers. The capsid encapsulates the two genomic RNAs By similarity.

Subcellular location

Capsid protein alpha: Virion Potential.

Sequence similarities

Belongs to the peptidase A6 family.

Ontologies

Keywords
   Cellular componentCapsid protein
T=3 icosahedral capsid protein
Virion
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentT=3 icosahedral viral capsid

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 340340Capsid protein alpha
PRO_0000402395

Sequences

Sequence LengthMass (Da)Tools
Q91D83 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: 6778BA835AABC269

FASTA34037,195
        10         20         30         40         50         60 
MVRKGDKKLA KPPTTKAANS QPRRRATQRR RSGRADAPLA KASTITGFGR ATNDVHISGM 

        70         80         90        100        110        120 
SRIAQAVVPA GTGTDGKIVV DSTIVPELLP RLGHAARIFQ RYAVETLEFE IQPMCPANTG 

       130        140        150        160        170        180 
GGYVAGFLPD PTDNDHTFDA LQATRGAVVA KWWESRTVRP QYTRTLLWTS TGKEQRLTSP 

       190        200        210        220        230        240 
GRLVLLCVGS NTDVVNVSVM CRWSVRLSVP SLETPEDTTA PITTQAPLHN DSINNGYTGF 

       250        260        270        280        290        300 
RSILLGATQL DLAPANAVFV TDKPLPIDYN LGVGDVDRAV YWHLRKKAGD TQVPAGYFDW 

       310        320        330        340 
GLWDDFNKTF TVGAPYYSDQ QPRQILLPAG TLFTRVDSEN 

« Hide

References

[1]"Establishment of an infectious RNA transcription system for striped jack nervous necrosis virus, the type species of the betanodaviruses."
Iwamoto T., Mise K., Mori K., Arimoto M., Nakai T., Okuno T.
J. Gen. Virol. 82:2653-2662(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AB056572 Genomic RNA. Translation: BAB64331.1.
RefSeqNP_599249.1. NC_003449.1.

3D structure databases

ProteinModelPortalQ91D83.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID991146.

Family and domain databases

InterProIPR024292. Nodavirus_capsid.
[Graphical view]
PfamPF11729. Capsid-VNN. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCAPSD_SJNNV
AccessionPrimary (citable) accession number: Q91D83
Entry history
Integrated into UniProtKB/Swiss-Prot: November 30, 2010
Last sequence update: December 1, 2001
Last modified: March 19, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Peptidase families

Classification of peptidase families and list of entries