Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q91D83

- CAPSD_SJNNV

UniProt

Q91D83 - CAPSD_SJNNV

Protein

Capsid protein alpha

Gene

alpha

Organism
Striped jack nervous necrosis virus (SjNNV)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (01 Dec 2001)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Capsid protein alpha self-assembles to form an icosahedral procapsid with a T=3 symmetry, about 30 nm in diameter, and consisting of 60 capsid proteins trimers. The capsid encapsulates the two genomic RNAs By similarity.By similarity

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Capsid protein alpha
    Gene namesi
    Name:alpha
    OrganismiStriped jack nervous necrosis virus (SjNNV)
    Taxonomic identifieri35297 [NCBI]
    Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageNodaviridaeBetanodavirus
    Virus hostiDicentrarchus labrax (European seabass) (Morone labrax) [TaxID: 13489]
    Epinephelus akaara (Hong Kong grouper) (Serranus akaara) [TaxID: 215347]
    Hippoglossus hippoglossus (Atlantic halibut) (Pleuronectes hippoglossus) [TaxID: 8267]
    Lates calcarifer (Barramundi) (Holocentrus calcarifer) [TaxID: 8187]
    Oplegnathus fasciatus (Barred knifejaw) (Scaradon fasciatus) [TaxID: 163134]
    ProteomesiUP000000414: Genome

    Subcellular locationi

    GO - Cellular componenti

    1. T=3 icosahedral viral capsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Capsid protein, T=3 icosahedral capsid protein, Virion

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 340340Capsid protein alphaPRO_0000402395Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliQ91D83.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the peptidase A6 family.Curated

    Family and domain databases

    Gene3Di2.60.120.20. 1 hit.
    InterProiIPR024292. Nodavirus_capsid.
    IPR029053. Viral_coat.
    [Graphical view]
    PfamiPF11729. Capsid-VNN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q91D83-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVRKGDKKLA KPPTTKAANS QPRRRATQRR RSGRADAPLA KASTITGFGR    50
    ATNDVHISGM SRIAQAVVPA GTGTDGKIVV DSTIVPELLP RLGHAARIFQ 100
    RYAVETLEFE IQPMCPANTG GGYVAGFLPD PTDNDHTFDA LQATRGAVVA 150
    KWWESRTVRP QYTRTLLWTS TGKEQRLTSP GRLVLLCVGS NTDVVNVSVM 200
    CRWSVRLSVP SLETPEDTTA PITTQAPLHN DSINNGYTGF RSILLGATQL 250
    DLAPANAVFV TDKPLPIDYN LGVGDVDRAV YWHLRKKAGD TQVPAGYFDW 300
    GLWDDFNKTF TVGAPYYSDQ QPRQILLPAG TLFTRVDSEN 340
    Length:340
    Mass (Da):37,195
    Last modified:December 1, 2001 - v1
    Checksum:i6778BA835AABC269
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB056572 Genomic RNA. Translation: BAB64331.1.
    RefSeqiNP_599249.1. NC_003449.1.

    Genome annotation databases

    GeneIDi991146.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB056572 Genomic RNA. Translation: BAB64331.1 .
    RefSeqi NP_599249.1. NC_003449.1.

    3D structure databases

    ProteinModelPortali Q91D83.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 991146.

    Family and domain databases

    Gene3Di 2.60.120.20. 1 hit.
    InterProi IPR024292. Nodavirus_capsid.
    IPR029053. Viral_coat.
    [Graphical view ]
    Pfami PF11729. Capsid-VNN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Establishment of an infectious RNA transcription system for striped jack nervous necrosis virus, the type species of the betanodaviruses."
      Iwamoto T., Mise K., Mori K., Arimoto M., Nakai T., Okuno T.
      J. Gen. Virol. 82:2653-2662(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

    Entry informationi

    Entry nameiCAPSD_SJNNV
    AccessioniPrimary (citable) accession number: Q91D83
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 30, 2010
    Last sequence update: December 1, 2001
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Peptidase families
      Classification of peptidase families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3