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Q91D83

- CAPSD_SJNNV

UniProt

Q91D83 - CAPSD_SJNNV

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Protein

Capsid protein alpha

Gene
alpha
Organism
Striped jack nervous necrosis virus (SjNNV)
Status
Reviewed - Annotation score: 1 out of 5 - Protein inferred from homologyi

Functioni

Capsid protein alpha self-assembles to form an icosahedral procapsid with a T=3 symmetry, about 30 nm in diameter, and consisting of 60 capsid proteins trimers. The capsid encapsulates the two genomic RNAs By similarity.

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein alpha
Gene namesi
Name:alpha
OrganismiStriped jack nervous necrosis virus (SjNNV)
Taxonomic identifieri35297 [NCBI]
Taxonomic lineageiVirusesssRNA positive-strand viruses, no DNA stageNodaviridaeBetanodavirus
Virus hostiDicentrarchus labrax (European seabass) (Morone labrax) [TaxID: 13489]
Epinephelus akaara (Hong Kong grouper) (Serranus akaara) [TaxID: 215347]
Hippoglossus hippoglossus (Atlantic halibut) (Pleuronectes hippoglossus) [TaxID: 8267]
Lates calcarifer (Barramundi) (Holocentrus calcarifer) [TaxID: 8187]
Oplegnathus fasciatus (Barred knifejaw) (Scaradon fasciatus) [TaxID: 163134]
ProteomesiUP000000414: Genome

Subcellular locationi

Chain Capsid protein alpha : Virion Reviewed prediction

GO - Cellular componenti

  1. T=3 icosahedral viral capsid Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, T=3 icosahedral capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 340340Capsid protein alphaPRO_0000402395Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ91D83.

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase A6 family.

Family and domain databases

Gene3Di2.60.120.20. 1 hit.
InterProiIPR024292. Nodavirus_capsid.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF11729. Capsid-VNN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q91D83-1 [UniParc]FASTAAdd to Basket

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MVRKGDKKLA KPPTTKAANS QPRRRATQRR RSGRADAPLA KASTITGFGR    50
ATNDVHISGM SRIAQAVVPA GTGTDGKIVV DSTIVPELLP RLGHAARIFQ 100
RYAVETLEFE IQPMCPANTG GGYVAGFLPD PTDNDHTFDA LQATRGAVVA 150
KWWESRTVRP QYTRTLLWTS TGKEQRLTSP GRLVLLCVGS NTDVVNVSVM 200
CRWSVRLSVP SLETPEDTTA PITTQAPLHN DSINNGYTGF RSILLGATQL 250
DLAPANAVFV TDKPLPIDYN LGVGDVDRAV YWHLRKKAGD TQVPAGYFDW 300
GLWDDFNKTF TVGAPYYSDQ QPRQILLPAG TLFTRVDSEN 340
Length:340
Mass (Da):37,195
Last modified:December 1, 2001 - v1
Checksum:i6778BA835AABC269
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB056572 Genomic RNA. Translation: BAB64331.1.
RefSeqiNP_599249.1. NC_003449.1.

Genome annotation databases

GeneIDi991146.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB056572 Genomic RNA. Translation: BAB64331.1 .
RefSeqi NP_599249.1. NC_003449.1.

3D structure databases

ProteinModelPortali Q91D83.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 991146.

Family and domain databases

Gene3Di 2.60.120.20. 1 hit.
InterProi IPR024292. Nodavirus_capsid.
IPR029053. Viral_coat.
[Graphical view ]
Pfami PF11729. Capsid-VNN. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Establishment of an infectious RNA transcription system for striped jack nervous necrosis virus, the type species of the betanodaviruses."
    Iwamoto T., Mise K., Mori K., Arimoto M., Nakai T., Okuno T.
    J. Gen. Virol. 82:2653-2662(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiCAPSD_SJNNV
AccessioniPrimary (citable) accession number: Q91D83
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 30, 2010
Last sequence update: December 1, 2001
Last modified: July 9, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Peptidase families
    Classification of peptidase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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