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Protein
Submitted name:

Coup transcription factor

Gene

nr2f5

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

ReceptorUniRule annotation

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Coup transcription factorImported
Gene namesi
Name:nr2f5Imported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-865600. nr2f5.

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ91720.
SMRiQ91720. Positions 54-135.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini60 – 13576Nuclear receptor DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the nuclear hormone receptor family.UniRule annotationSAAS annotation
Contains nuclear receptor DNA-binding domain.SAAS annotation

Keywords - Domaini

Zinc-fingerUniRule annotationSAAS annotation

Phylogenomic databases

HOVERGENiHBG005606.
KOiK08702.

Family and domain databases

Gene3Di1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProiIPR003068. COUP_TF.
IPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view]
PRINTSiPR01282. COUPTNFACTOR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiSM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view]
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiPS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q91720-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMVVNPWQE DIPGVPGSQM NNPPGLCNQD PGGTPQTPTT PKGGIPGQDP
60 70 80 90 100
VHSGDKGVPN VDCLVCGDKS SGKHYGQFTC EGCKSFFKRS VRRNLTYTCR
110 120 130 140 150
SNRDCPIDQH HRNQCQYCRL KKCLKVGMRR EVQRGRMSHP QTSPGQYTLN
160 170 180 190 200
NVDPYNGHSY LTGFISLLLR AEPYPTSRYG AQCLQPNNIM GIENICELAA
210 220 230 240 250
RLLFSAIEWA KNIPFFPDFQ LSDQVSLLRM TWSELFVLNA AQCSMPLHVA
260 270 280 290 300
PLLARAGLHA SPMSADRVVA FMDHIRIFQE QVEKLKALHV DSAEYSCLKA
310 320 330 340 350
IALFTPDAVG LSDIGHVESI QEKSQCALEE YVRNQYPNQP TRFGRLLLRL
360 370 380 390
PSLRIVSAPV IEQLFFVRLV GKTPIETLIR DMLLSGSSFN WPYMPMQ
Length:397
Mass (Da):44,470
Last modified:November 1, 1996 - v1
Checksum:iD0A53FA5AF66E4A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X63092 mRNA. Translation: CAA44806.1.
PIRiS20617.
RefSeqiNP_001095229.1. NM_001101759.1.
UniGeneiXl.1157.

Genome annotation databases

GeneIDi397883.
KEGGixla:397883.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X63092 mRNA. Translation: CAA44806.1.
PIRiS20617.
RefSeqiNP_001095229.1. NM_001101759.1.
UniGeneiXl.1157.

3D structure databases

ProteinModelPortaliQ91720.
SMRiQ91720. Positions 54-135.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi397883.
KEGGixla:397883.

Organism-specific databases

CTDi30427.
XenbaseiXB-GENE-865600. nr2f5.

Phylogenomic databases

HOVERGENiHBG005606.
KOiK08702.

Family and domain databases

Gene3Di1.10.565.10. 1 hit.
3.30.50.10. 1 hit.
InterProiIPR003068. COUP_TF.
IPR000536. Nucl_hrmn_rcpt_lig-bd.
IPR001723. Nuclear_hrmn_rcpt.
IPR001628. Znf_hrmn_rcpt.
IPR013088. Znf_NHR/GATA.
[Graphical view]
PfamiPF00104. Hormone_recep. 1 hit.
PF00105. zf-C4. 1 hit.
[Graphical view]
PRINTSiPR01282. COUPTNFACTOR.
PR00398. STRDHORMONER.
PR00047. STROIDFINGER.
SMARTiSM00430. HOLI. 1 hit.
SM00399. ZnF_C4. 1 hit.
[Graphical view]
SUPFAMiSSF48508. SSF48508. 1 hit.
PROSITEiPS00031. NUCLEAR_REC_DBD_1. 1 hit.
PS51030. NUCLEAR_REC_DBD_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Cloning and sequencing of a COUP transcription factor gene expressed in Xenopus embryos."
    Matharu P.J., Sweeney G.E.
    Biochim. Biophys. Acta 1129:331-334(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Whole embryoImported.

Entry informationi

Entry nameiQ91720_XENLA
AccessioniPrimary (citable) accession number: Q91720
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 6, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.