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Protein
Submitted name:

Xcad-3 protein

Gene

cdx4

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Xcad-3 proteinImported
Gene namesi
Name:cdx4Imported
Synonyms:Xcad-3Imported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-482791. cdx4.

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ91542.
SMRiQ91542. Positions 158-205.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini149 – 20961Homeobox DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains homeobox DNA-binding domain.SAAS annotation

Keywords - Domaini

HomeoboxUniRule annotationSAAS annotation

Phylogenomic databases

HOVERGENiHBG005302.
KOiK09312.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR006820. Caudal_activation_dom.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF04731. Caudal_act. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q91542-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDITCGRQTV HKDATMYPLS VRSTSNNHTA QNYVSNQPYF NYVAYHHVPP
60 70 80 90 100
MDDQGQPMEF GDSVWITEGG MELLWSWTLT QIWHKSSDLS PNQFAYNSSG
110 120 130 140 150
YSSPHPSGTG ILHSVDLTHA AANSPSALSQ NSYEWMGKTV QSTSTGKTRT
160 170 180 190 200
KEKYTVVYTD HQRLELEKEF HYSRYITIRR KTELAANLRL SERQVKIWFQ
210 220 230 240 250
NRRAKEGAIQ EENEPSLWLC SVQSDSSSAS PNPLCDSAVH TDMSGSLYQP
260 270
ATPNCTQWPI ARAGSVCKHV TLSQ
Length:274
Mass (Da):30,900
Last modified:November 1, 1996 - v1
Checksum:iC753A023418BAFAE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U02034 mRNA. Translation: AAA17735.1.
PIRiI51650.
RefSeqiNP_001080720.1. NM_001087251.1.
UniGeneiXl.26888.

Genome annotation databases

GeneIDi380412.
KEGGixla:380412.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U02034 mRNA. Translation: AAA17735.1.
PIRiI51650.
RefSeqiNP_001080720.1. NM_001087251.1.
UniGeneiXl.26888.

3D structure databases

ProteinModelPortaliQ91542.
SMRiQ91542. Positions 158-205.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi380412.
KEGGixla:380412.

Organism-specific databases

CTDi1046.
XenbaseiXB-GENE-482791. cdx4.

Phylogenomic databases

HOVERGENiHBG005302.
KOiK09312.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR006820. Caudal_activation_dom.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
[Graphical view]
PfamiPF04731. Caudal_act. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS50071. HOMEOBOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Dorsal-vental differences in Xcad-3 expression in response to FGF-mediated induction in Xenopus."
    Nothrop J.L., Kimelman D.
    Dev. Biol. 161:490-503(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ91542_XENLA
AccessioniPrimary (citable) accession number: Q91542
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.