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Protein
Submitted name:

Snail1

Gene

snai1a

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • metal ion binding Source: InterPro
  • NF-kappaB binding Source: ZFIN
  • nucleic acid binding Source: InterPro

GO - Biological processi

  • cell migration involved in gastrulation Source: ZFIN
  • dorsal/ventral pattern formation Source: ZFIN
  • epithelial to mesenchymal transition Source: ZFIN
  • gastrulation Source: ZFIN
  • mesodermal cell migration Source: ZFIN
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Snail1Imported
Gene namesi
Name:snai1aImported
Synonyms:snail1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-990415-255. snai1a.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: ZFIN
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ91367.

Expressioni

Gene expression databases

BgeeiQ91367.

Interactioni

GO - Molecular functioni

  • NF-kappaB binding Source: ZFIN

Protein-protein interaction databases

STRINGi7955.ENSDARP00000111412.

Structurei

3D structure databases

ProteinModelPortaliQ91367.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini150 – 17324C2H2-typeInterPro annotationAdd
BLAST
Domaini176 – 20328C2H2-typeInterPro annotationAdd
BLAST
Domaini204 – 23128C2H2-typeInterPro annotationAdd
BLAST
Domaini232 – 25019C2H2-typeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG2462. Eukaryota.
ENOG41106JS. LUCA.
HOGENOMiHOG000261665.
HOVERGENiHBG007477.
PhylomeDBiQ91367.

Family and domain databases

Gene3Di3.30.160.60. 2 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 4 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q91367-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRSFLVKKY FTSKRPNYSE LECQNDTSPD RYPLAELPAV SNDFPVTCLT
60 70 80 90 100
TGLVWDVSLL PSLHNSPSPS TLSTNQGPLD LSSPSSISCS SSGEEDEGRT
110 120 130 140 150
SDPPSPPSPD SSDTYHPQQT SRPRRSNKSR AGQREDKSEA AVTAASRPAF
160 170 180 190 200
FCKHCPKEYN SLGALKMHIR SHTLPCVCPT CGKAFSRPWL LRGHIRTHTG
210 220 230 240 250
ERPFSCPHCN RAFADRSNLR AHLQTHADVK KYQCSTCSRT FSRMSLLQKH
260
SAAGCCPSTA NVQ
Length:263
Mass (Da):28,984
Last modified:November 1, 1996 - v1
Checksum:i7F43CB6A57C25D70
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
S68799 mRNA. Translation: AAB29875.1.
PIRiI51225.
UniGeneiDr.141640.
Dr.75079.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
S68799 mRNA. Translation: AAB29875.1.
PIRiI51225.
UniGeneiDr.141640.
Dr.75079.

3D structure databases

ProteinModelPortaliQ91367.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000111412.

Proteomic databases

PaxDbiQ91367.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

ZFINiZDB-GENE-990415-255. snai1a.

Phylogenomic databases

eggNOGiKOG2462. Eukaryota.
ENOG41106JS. LUCA.
HOGENOMiHOG000261665.
HOVERGENiHBG007477.
PhylomeDBiQ91367.

Miscellaneous databases

NextBioi20806719.

Gene expression databases

BgeeiQ91367.

Family and domain databases

Gene3Di3.30.160.60. 2 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 4 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 3 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos."
    Thisse C., Thisse B., Schilling T.F., Postlethwait J.H.
    Development 119:1203-1215(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ91367_DANRE
AccessioniPrimary (citable) accession number: Q91367
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: March 16, 2016
This is version 114 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.