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Protein
Submitted name:

Cell adhesion molecule PCAM

Gene

ncam1b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • axon guidance Source: ZFIN
  • cell adhesion Source: InterPro

Names & Taxonomyi

Protein namesi
Submitted name:
Cell adhesion molecule PCAMImported
Submitted name:
Neural cell adhesion molecule 3Imported
Submitted name:
PCAMImported
Gene namesi
Name:ncam1bImported
Synonyms:ncam3Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-010822-2 ncam1b

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei717 – 740HelicalSequence analysisAdd BLAST24

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_501410765820 – 1031Sequence analysisAdd BLAST1012

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 108Ig-likeInterPro annotationAdd BLAST106
Domaini115 – 202Ig-likeInterPro annotationAdd BLAST88
Domaini209 – 295Ig-likeInterPro annotationAdd BLAST87
Domaini302 – 405Ig-likeInterPro annotationAdd BLAST104
Domaini410 – 498Ig-likeInterPro annotationAdd BLAST89
Domaini504 – 601Fibronectin type-IIIInterPro annotationAdd BLAST98
Domaini604 – 700Fibronectin type-IIIInterPro annotationAdd BLAST97

Keywords - Domaini

RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3510 Eukaryota
ENOG410XPX0 LUCA
HOGENOMiHOG000074124
HOVERGENiHBG052579
KOiK06491

Family and domain databases

CDDicd00063 FN3, 2 hits
Gene3Di2.60.40.10, 7 hits
InterProiView protein in InterPro
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR007110 Ig-like_dom
IPR036179 Ig-like_dom_sf
IPR013783 Ig-like_fold
IPR013098 Ig_I-set
IPR003599 Ig_sub
IPR003598 Ig_sub2
IPR033019 Ncam1
IPR009138 Neural_cell_adh
PANTHERiPTHR44059:SF2 PTHR44059:SF2, 1 hit
PfamiView protein in Pfam
PF00041 fn3, 2 hits
PF07679 I-set, 3 hits
PRINTSiPR01838 NCAMFAMILY
SMARTiView protein in SMART
SM00060 FN3, 2 hits
SM00409 IG, 5 hits
SM00408 IGc2, 5 hits
SUPFAMiSSF48726 SSF48726, 5 hits
SSF49265 SSF49265, 1 hit
PROSITEiView protein in PROSITE
PS50853 FN3, 2 hits
PS50835 IG_LIKE, 5 hits

Sequencei

Sequence statusi: Complete.

Q90YM2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFPTKAIILV LLFFDNAVSL QVDITPAHGE ISVGESRFFL CEVIGGAKEI
60 70 80 90 100
DWFAPAGEKI EPGRPDISVI RNDETSSTLT IYNAKVDNAG TYRCVASSGD
110 120 130 140 150
QDAEATVNLK IYQKITFTNV PSPQEFTEGD NAIIVCDVIS SPPPTVLWKY
160 170 180 190 200
KGAKIQFDKD VRFKTLSNNH LQIRGIRKTD EGVYTCEGRI KARGEVDFRS
210 220 230 240 250
IKVVVNVLPT IRIRQAETNA TADMGFSTLL ACDPDGFPEP IVTWRRNNAP
260 270 280 290 300
LESGNKYSFN EDGSEMTVLD VTKLDEGDYT CIAKNKAGES EQELSLKVFV
310 320 330 340 350
QPKITYLESQ TTTEMDEQVT LTCEATGDPT PTITWSFGTR VFTEGEQASW
360 370 380 390 400
TRPEQHKGPD GEVLVRSDAR VSSLTLKYPQ YTDAGQYLCT ARNAIGETVQ
410 420 430 440 450
PVSLEVRYAP KILGSVAVYT WEGNPANISC EVLAHPSDVS ITWLRDGFQL
460 470 480 490 500
PNANTSNIKI HNTPSASYLE VNPESQSDFG NYNCTASNEI GTESREFIMI
510 520 530 540 550
PADVPSAPSI GEVQPYSSTA QVLFEEPEST GGVPVLKYRA EWRAVGRGKW
560 570 580 590 600
VQRVYEVKDG LSSVTVTGLK PETDYEVKMS AINGKGEGDS SPSMVFKTEH
610 620 630 640 650
VQGEPSPPIL EGTLQPKGNS LKVKWIKQDD GGSPITHYLV RYKAREDSEW
660 670 680 690 700
KPEIRLPSGS EYVMLIGLDW DTEYDVFVVA ENQQGKSKPG TLTFRTSSEP
710 720 730 740 750
TATTDSMEDG PGLNTGVIVG ILILVCVLLL LIVDATCCFL NKCGILMCIC
760 770 780 790 800
GKPGQSTKGK DIETGKAAFV QDVSKEPIVE VRTEEEATAN HDAEGHLEPN
810 820 830 840 850
ETTPLTEPEQ VTETAAAVVD LPLSVPTNSD TITDTFDLSQ SSPVSESTTL
860 870 880 890 900
TSSITAPPSD PINPVHMTPP DSSTPKTHSR PSISSSDPAN VTLLVDLAEV
910 920 930 940 950
SPAVPSEEPV QVPSSPTSVD HPGTIISKVT ENESVQSPSH AALNPISPQG
960 970 980 990 1000
DIAVPLVNHE LEIDGELPLA SDTDATQDGS HAGGTAGSSG PSAPAQDEKI
1010 1020 1030
LEDENAELKK VAPDAGFEPN AVTQTNIESK A
Length:1,031
Mass (Da):111,423
Last modified:December 1, 2001 - v1
Checksum:iC53F7DA51768C580
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC162073 mRNA Translation: AAI62073.1
AY029401 mRNA Translation: AAK38466.1
HM467819 mRNA Translation: ADV36249.1
RefSeqiNP_571906.1, NM_131831.1
UniGeneiDr.12600

Genome annotation databases

GeneIDi114442
KEGGidre:114442

Similar proteinsi

Entry informationi

Entry nameiQ90YM2_DANRE
AccessioniPrimary (citable) accession number: Q90YM2
Entry historyiIntegrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: March 28, 2018
This is version 131 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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