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Protein
Submitted name:

Cell adhesion molecule OCAM

Gene

ncam2

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • cell adhesion Source: InterPro
  • response to hypoxia Source: ZFIN
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Cell adhesion molecule OCAMImported
Submitted name:
Neural cell adhesion molecule 2Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:ncam2Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 9

Organism-specific databases

ZFINiZDB-GENE-010822-1. ncam2.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei692 – 715HelicalSequence analysisAdd BLAST24

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 18Sequence analysisAdd BLAST18
ChainiPRO_500878522019 – 795Sequence analysisAdd BLAST777

Expressioni

Gene expression databases

BgeeiENSDARG00000017466.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 107Ig-like (immunoglobulin-like)InterPro annotationAdd BLAST88
Domaini112 – 195Ig-like (immunoglobulin-like)InterPro annotationAdd BLAST84
Domaini206 – 295Ig-like (immunoglobulin-like)InterPro annotationAdd BLAST90
Domaini300 – 394Ig-like (immunoglobulin-like)InterPro annotationAdd BLAST95
Domaini399 – 489Ig-like (immunoglobulin-like)InterPro annotationAdd BLAST91
Domaini493 – 589Fibronectin type-IIIInterPro annotationAdd BLAST97
Domaini591 – 686Fibronectin type-IIIInterPro annotationAdd BLAST96

Keywords - Domaini

RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

GeneTreeiENSGT00860000133697.
HOGENOMiHOG000074124.
HOVERGENiHBG052579.
KOiK06491.
OMAiNISCDVM.
OrthoDBiEOG091G00V0.

Family and domain databases

CDDicd00063. FN3. 2 hits.
Gene3Di2.60.40.10. 7 hits.
InterProiIPR003961. FN3_dom.
IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR013098. Ig_I-set.
IPR003599. Ig_sub.
IPR003598. Ig_sub2.
IPR009138. Neural_cell_adh.
[Graphical view]
PfamiPF00041. fn3. 2 hits.
PF07679. I-set. 4 hits.
[Graphical view]
PRINTSiPR01838. NCAMFAMILY.
SMARTiSM00060. FN3. 2 hits.
SM00409. IG. 5 hits.
SM00408. IGc2. 5 hits.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 5 hits.
SSF49265. SSF49265. 1 hit.
PROSITEiPS50853. FN3. 2 hits.
PS50835. IG_LIKE. 5 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q90YM0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIRTVLCFLG LLVGGSQGAL QVSISLKKVE LSVGESKFFT CTVIGEPVKL
60 70 80 90 100
EWFNPQGERM VASPRVALHN EGIRSRLTLY NAKIEDAGIY RCQATDAQGE
110 120 130 140 150
TQEATVVLEI YQKLTFRDVR SPQEFRQGEV AEVVCDVTSS PVPVVSWFYN
160 170 180 190 200
NIEITEDTEK FELLQNNNLQ VQKVTKADEG VYRCEARVEA RGEIDFRNII
210 220 230 240 250
LVVNVPPVVS VPQQSFNATA DYGESVTFTC RAYGSPEPDV TWHRKGVQLQ
260 270 280 290 300
ESERYVMRAR GTTLTVRNIQ QDDGGSYTCR ASNKAGEVEH ELFLKVFVQP
310 320 330 340 350
HITKLRNVTA VEGSAAMISC KAEGEPLPEI SWRRASDGHS FSDGDKSPDG
360 370 380 390 400
RVEVRGRYGE SMLTIVVVKL SDWGRFDCEA LSRIGGHQKS MFLDIEYAPK
410 420 430 440 450
FQANHTIFFS WEGNPVNISC DVMSNPPATM LWRREKLTIP SEGAGNMRVY
460 470 480 490 500
TAPGRSLLEV TPMSDRDFGR YNCTARNNIG MRFQEFILAQ ADVPSNPYSV
510 520 530 540 550
RLSSVAQRVA TVTFTKPDSH GGVPISHYLV KYKDISSQDW KDVKSLGTQT
560 570 580 590 600
IVLLTNLEPN TTYEVRVSAV NGKGQGEFSH TESFQTLPIR EPSPPSVQGQ
610 620 630 640 650
RGVGKAYRLG LVKQDDGGMP ILEYIVKYKT DKEEQWMTKL VPGVNDFVLL
660 670 680 690 700
QPLQWNTQYE VEITARNVKG LSEPTVVKFS MPQKPDITAD SLFSGLGLGA
710 720 730 740 750
VVGLGLAGLL LLLVLVDVSC FFLRQCGLLM CITRKLCSKK TATSGKSKEL
760 770 780 790
EEGKAAYLKL PLKEENGKET LKPDTIEIKL HGDNSLHMTQ EDSKA
Length:795
Mass (Da):88,390
Last modified:December 1, 2001 - v1
Checksum:iDF6D5014C778B387
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX957273 Genomic DNA. No translation available.
CR759897 Genomic DNA. No translation available.
CR847542 Genomic DNA. No translation available.
CU074387 Genomic DNA. No translation available.
BC162324 mRNA. Translation: AAI62324.1.
AY029403 mRNA. Translation: AAK38468.1.
RefSeqiNP_571905.1. NM_131830.2.
UniGeneiDr.133217.

Genome annotation databases

EnsembliENSDART00000100681; ENSDARP00000091454; ENSDARG00000017466.
GeneIDi114441.
KEGGidre:114441.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX957273 Genomic DNA. No translation available.
CR759897 Genomic DNA. No translation available.
CR847542 Genomic DNA. No translation available.
CU074387 Genomic DNA. No translation available.
BC162324 mRNA. Translation: AAI62324.1.
AY029403 mRNA. Translation: AAK38468.1.
RefSeqiNP_571905.1. NM_131830.2.
UniGeneiDr.133217.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000100681; ENSDARP00000091454; ENSDARG00000017466.
GeneIDi114441.
KEGGidre:114441.

Organism-specific databases

CTDi4685.
ZFINiZDB-GENE-010822-1. ncam2.

Phylogenomic databases

GeneTreeiENSGT00860000133697.
HOGENOMiHOG000074124.
HOVERGENiHBG052579.
KOiK06491.
OMAiNISCDVM.
OrthoDBiEOG091G00V0.

Gene expression databases

BgeeiENSDARG00000017466.

Family and domain databases

CDDicd00063. FN3. 2 hits.
Gene3Di2.60.40.10. 7 hits.
InterProiIPR003961. FN3_dom.
IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR013098. Ig_I-set.
IPR003599. Ig_sub.
IPR003598. Ig_sub2.
IPR009138. Neural_cell_adh.
[Graphical view]
PfamiPF00041. fn3. 2 hits.
PF07679. I-set. 4 hits.
[Graphical view]
PRINTSiPR01838. NCAMFAMILY.
SMARTiSM00060. FN3. 2 hits.
SM00409. IG. 5 hits.
SM00408. IGc2. 5 hits.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 5 hits.
SSF49265. SSF49265. 1 hit.
PROSITEiPS50853. FN3. 2 hits.
PS50835. IG_LIKE. 5 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ90YM0_DANRE
AccessioniPrimary (citable) accession number: Q90YM0
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: November 30, 2016
This is version 114 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.