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Protein
Submitted name:

Claudin a

Gene

cldna

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Claudin aImported
Gene namesi
Name:cldnaImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-010328-1. cldna.

Subcellular locationi

  • Cell junctiontight junction SAAS annotation
  • Cell membrane SAAS annotation
  • Cell membrane SAAS annotation; Multi-pass membrane protein SAAS annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei6 – 3025HelicalSequence analysisAdd
BLAST
Transmembranei79 – 9921HelicalSequence analysisAdd
BLAST
Transmembranei119 – 14022HelicalSequence analysisAdd
BLAST
Transmembranei160 – 18122HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell junction, Cell membraneSAAS annotation, Membrane, Tight junctionSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiQ90XS1.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000092862.

Family & Domainsi

Sequence similaritiesi

Belongs to the claudin family.SAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiENOG410IIJR. Eukaryota.
ENOG410YA61. LUCA.
HOVERGENiHBG000643.
KOiK06087.
PhylomeDBiQ90XS1.

Family and domain databases

InterProiIPR006187. Claudin.
IPR004031. PMP22/EMP/MP20/Claudin.
[Graphical view]
PANTHERiPTHR12002. PTHR12002. 1 hit.
PfamiPF00822. PMP22_Claudin. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q90XS1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVSAGLQMVG IALAVIGWIG VIVVCILPMW QVTAFIGQNI VTAQVTWEGI
60 70 80 90 100
WMSCVVQSTG QMQCKVYDSM LALSSDLQAA RALCIISILV GVVGILLAAA
110 120 130 140 150
GGKCTTCIXE ERAKAKVCVI SGAIFIVAGV LCLIPVCWTA NNIIRDFYNP
160 170 180 190 200
MTNSAQKREL GASLFIGWGA SALLIIGGSL LCANCPPQDQ YKATYTARSG

GTKGYV
Length:206
Mass (Da):21,695
Last modified:December 1, 2001 - v1
Checksum:i69CF7A8554A2EFCF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF359423 mRNA. Translation: AAL01830.1.
RefSeqiNP_571837.2. NM_131762.2.
UniGeneiDr.77880.

Genome annotation databases

GeneIDi81580.
KEGGidre:81580.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF359423 mRNA. Translation: AAL01830.1.
RefSeqiNP_571837.2. NM_131762.2.
UniGeneiDr.77880.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000092862.

Proteomic databases

PaxDbiQ90XS1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi81580.
KEGGidre:81580.

Organism-specific databases

CTDi81580.
ZFINiZDB-GENE-010328-1. cldna.

Phylogenomic databases

eggNOGiENOG410IIJR. Eukaryota.
ENOG410YA61. LUCA.
HOVERGENiHBG000643.
KOiK06087.
PhylomeDBiQ90XS1.

Family and domain databases

InterProiIPR006187. Claudin.
IPR004031. PMP22/EMP/MP20/Claudin.
[Graphical view]
PANTHERiPTHR12002. PTHR12002. 1 hit.
PfamiPF00822. PMP22_Claudin. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ90XS1_DANRE
AccessioniPrimary (citable) accession number: Q90XS1
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: June 8, 2016
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.