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Protein

Claudin

Gene

cldnf

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
ClaudinUniRule annotation
Gene namesi
Name:cldnfImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-010328-6. cldnf.

Subcellular locationi

  • Cell membrane SAAS annotation; Multi-pass membrane protein SAAS annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei12 – 3019HelicalSequence analysisAdd
BLAST
Transmembranei82 – 10524HelicalSequence analysisAdd
BLAST
Transmembranei117 – 14226HelicalSequence analysisAdd
BLAST
Transmembranei162 – 18221HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell junction, Cell membraneUniRule annotationSAAS annotation, Membrane, Tight junctionUniRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiQ90XS0.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000118625.

Family & Domainsi

Sequence similaritiesi

Belongs to the claudin family.UniRule annotationSAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixUniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG410KE68. Eukaryota.
ENOG4111CI3. LUCA.
HOVERGENiHBG000643.
KOiK06087.
PhylomeDBiQ90XS0.

Family and domain databases

InterProiIPR006187. Claudin.
IPR017974. Claudin_CS.
IPR004031. PMP22/EMP/MP20/Claudin.
[Graphical view]
PANTHERiPTHR12002. PTHR12002. 1 hit.
PfamiPF00822. PMP22_Claudin. 1 hit.
[Graphical view]
PROSITEiPS01346. CLAUDIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q90XS0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRIAKEVAG QTLCFIGFVG ICICCGIPMW RVTTYIGANI VTGQIVWDGL
60 70 80 90 100
WMNCVMQSTG QMQCKIQDSI MNLTQDLQVA RALVIISILI GFMGMLLTFI
110 120 130 140 150
GGQCSSCLKN ESSMAKVLIL GGILCIVAGV LLLIPVCWSA AYTISDYVSV
160 170 180 190 200
TTIQTQKREL GASIYVGWGA SAFLLFGGII LCTSCPPREN IYPQYPGMYP
210 220 230
YQGPVYGHQY APSAVYSGIN KPYHPPVAYT PAPRQYL
Length:237
Mass (Da):25,763
Last modified:December 1, 2001 - v1
Checksum:iB9396D893D7C1D1E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF359424 mRNA. Translation: AAL01831.1.
RefSeqiNP_571841.1. NM_131766.1.
UniGeneiDr.135398.
Dr.159463.

Genome annotation databases

GeneIDi81585.
KEGGidre:81585.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF359424 mRNA. Translation: AAL01831.1.
RefSeqiNP_571841.1. NM_131766.1.
UniGeneiDr.135398.
Dr.159463.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000118625.

Proteomic databases

PaxDbiQ90XS0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi81585.
KEGGidre:81585.

Organism-specific databases

CTDi81585.
ZFINiZDB-GENE-010328-6. cldnf.

Phylogenomic databases

eggNOGiENOG410KE68. Eukaryota.
ENOG4111CI3. LUCA.
HOVERGENiHBG000643.
KOiK06087.
PhylomeDBiQ90XS0.

Miscellaneous databases

NextBioi20934161.

Family and domain databases

InterProiIPR006187. Claudin.
IPR017974. Claudin_CS.
IPR004031. PMP22/EMP/MP20/Claudin.
[Graphical view]
PANTHERiPTHR12002. PTHR12002. 1 hit.
PfamiPF00822. PMP22_Claudin. 1 hit.
[Graphical view]
PROSITEiPS01346. CLAUDIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ90XS0_DANRE
AccessioniPrimary (citable) accession number: Q90XS0
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: May 11, 2016
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.