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Protein
Submitted name:

Claudin 12 isoform fc27c11

Gene

cldn12

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Claudin 12 isoform fc27c11Imported
Gene namesi
Name:cldn12Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-010328-14. cldn12.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei12 – 3322HelicalSequence analysisAdd
BLAST
Transmembranei85 – 10521HelicalSequence analysisAdd
BLAST
Transmembranei126 – 14924HelicalSequence analysisAdd
BLAST
Transmembranei169 – 19729HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiQ90XR3.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000014514.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IE44. Eukaryota.
ENOG410ZR1K. LUCA.
HOVERGENiHBG050986.
PhylomeDBiQ90XR3.

Family and domain databases

InterProiIPR013287. Claudin12.
[Graphical view]
PRINTSiPR01872. CLAUDIN12.

Sequencei

Sequence statusi: Complete.

Q90XR3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSCRDIHATN AFAFVIAMLS VGGLTVATLI PQWRTMRLLT FNRNAKNVTV
60 70 80 90 100
YDGLWTKCVR RDGSSGCYYF DSDWYAKVDQ LDLRLLQFCL PTGLLFSSLA
110 120 130 140 150
LLLCLTGMCK TACCSKTPDD IKNSRCLVNS SGCHLVAGML LFLGGAIAMP
160 170 180 190 200
PSVWFLFHTR HLNERYDHLF AVEFGVYVAI GSAGGLILAA LLMFMWYCMC
210 220 230 240 250
KKLPSPFWLP LPEVPTMTQS LSAQPLMTNG LPTPVTYAPQ SFPPAVLDAP
260 270 280 290 300
AFVPMQGYPQ PAPTQPMPPH VYMPQMSVPD GYGSEVGASQ VYSYAPSQSY
310 320 330 340
APSQGYAPSQ SYAPSQRYAG HRYSTRSRTS GIEIDIPVLT D
Length:341
Mass (Da):37,481
Last modified:December 1, 2001 - v1
Checksum:i3D6E1BD80A285EFA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF359431 mRNA. Translation: AAL01838.1.
UniGeneiDr.3771.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF359431 mRNA. Translation: AAL01838.1.
UniGeneiDr.3771.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000014514.

Proteomic databases

PaxDbiQ90XR3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

ZFINiZDB-GENE-010328-14. cldn12.

Phylogenomic databases

eggNOGiENOG410IE44. Eukaryota.
ENOG410ZR1K. LUCA.
HOVERGENiHBG050986.
PhylomeDBiQ90XR3.

Family and domain databases

InterProiIPR013287. Claudin12.
[Graphical view]
PRINTSiPR01872. CLAUDIN12.
ProtoNetiSearch...

Entry informationi

Entry nameiQ90XR3_DANRE
AccessioniPrimary (citable) accession number: Q90XR3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: December 9, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.