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Protein
Submitted name:

Claudin c

Gene

cldnc

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • fin regeneration Source: ZFIN

Names & Taxonomyi

Protein namesi
Submitted name:
Claudin cImported
Gene namesi
Name:cldncImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 21

Organism-specific databases

ZFINiZDB-GENE-010328-3 cldnc

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei7 – 30HelicalSequence analysisAdd BLAST24
Transmembranei79 – 102HelicalSequence analysisAdd BLAST24
Transmembranei123 – 144HelicalSequence analysisAdd BLAST22
Transmembranei164 – 183HelicalSequence analysisAdd BLAST20

Keywords - Cellular componenti

Cell junction, Cell membraneSAAS annotation, Membrane, Tight junctionSAAS annotation

Expressioni

Gene expression databases

BgeeiENSDARG00000015955

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000002797

Family & Domainsi

Sequence similaritiesi

Belongs to the claudin family.SAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiENOG410IIJR Eukaryota
ENOG410YA61 LUCA
GeneTreeiENSGT00760000118928
HOGENOMiHOG000220937
HOVERGENiHBG000643
KOiK06087
OMAiTAQVYWE
OrthoDBiEOG091G0MMR
TreeFamiTF331936

Family and domain databases

InterProiView protein in InterPro
IPR006187 Claudin
IPR003549 Claudin3
IPR004031 PMP22/EMP/MP20/Claudin
PANTHERiPTHR12002 PTHR12002, 1 hit
PfamiView protein in Pfam
PF00822 PMP22_Claudin, 1 hit
PRINTSiPR01378 CLAUDIN3

Sequencei

Sequence statusi: Complete.

Q90XR2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASFGLELVG VTLSVLGWIL NIVCCALPMW RVTAFIGTNI VTAQVYWEGI
60 70 80 90 100
WMSCVVQSTG QMQCKVYDSM LALPADLQAA RALVVVAIIV GVLALFVAIV
110 120 130 140 150
GAKCTNCIEE EAAKARVMIS SGAAFITASV LQLIPVCWSA HTVILEFYSP
160 170 180 190 200
LVPEAQKMEI GASLYLGWAA SAMLLVGGSI LCCSCPPKDE TRYPPQSRIA
210
YSAHHSVAPS TYNKRDYV
Length:218
Mass (Da):23,426
Last modified:December 1, 2001 - v1
Checksum:i82CA23D13306110F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR847847 Genomic DNA No translation available.
BC065424 mRNA Translation: AAH65424.1
AF359432 mRNA Translation: AAL01839.1
RefSeqiNP_571839.1, NM_131764.1
UniGeneiDr.12596
Dr.159082

Genome annotation databases

EnsembliENSDART00000002341; ENSDARP00000002797; ENSDARG00000015955
GeneIDi81582
KEGGidre:81582

Similar proteinsi

Entry informationi

Entry nameiQ90XR2_DANRE
AccessioniPrimary (citable) accession number: Q90XR2
Entry historyiIntegrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: March 28, 2018
This is version 107 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health