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Protein
Submitted name:

Claudin 12 isoform fc43a12

Gene

cldn12

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Claudin 12 isoform fc43a12Imported
Gene namesi
Name:cldn12Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 16

Organism-specific databases

ZFINiZDB-GENE-010328-14 cldn12

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 33HelicalSequence analysisAdd BLAST22
Transmembranei85 – 105HelicalSequence analysisAdd BLAST21
Transmembranei126 – 149HelicalSequence analysisAdd BLAST24
Transmembranei169 – 197HelicalSequence analysisAdd BLAST29

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSDARG00000003927

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000014514

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IE44 Eukaryota
ENOG410ZR1K LUCA
GeneTreeiENSGT00400000022250
HOVERGENiHBG050986
OrthoDBiEOG091G0E18
TreeFamiTF331972

Family and domain databases

InterProiView protein in InterPro
IPR013287 Claudin12
PANTHERiPTHR16703 PTHR16703, 1 hit
PRINTSiPR01872 CLAUDIN12

Sequencei

Sequence statusi: Complete.

Q90XR1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSCRDIHATN AFAFVIAMLS VGGLTVATLI PQWRTMRLLT FNRNAKNVTV
60 70 80 90 100
YDGLWTKCVR RDGSSGCYYF DSDWYAKVDQ LDLRLLQFCL PTGLLFSSLA
110 120 130 140 150
LLLCLTGMCK TACCSKTPDD IKNSRCLVNS SGCHLVAGML LFLGGAIAMP
160 170 180 190 200
PSVWFLFHTR HLNERYDHLF AVEFGVYVAI GSAGGLILAA LLMFMWYCMC
210 220 230 240 250
KKLPSPFWLP LPEVPTMTQS LSAQPLMTNG LPTPVTYAPQ SFPPAVLDAP
260 270 280 290 300
AFVPMQGYPQ PASTQPMPPH VYMPQMSVPD GYGSEVGASQ VYSYAPSQSY
310 320 330 340
APSQGYAPSQ SYAPSQRYAG HRYSTRSRTS GIEIDIPVLT D
Length:341
Mass (Da):37,471
Last modified:December 1, 2001 - v1
Checksum:i80FC74259A285D36
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR848685 Genomic DNA No translation available.
AF359433 mRNA Translation: AAL01840.1
RefSeqiNP_571848.1, NM_131773.2
UniGeneiDr.3771

Genome annotation databases

EnsembliENSDART00000025877; ENSDARP00000014514; ENSDARG00000003927
GeneIDi81593
KEGGidre:81593

Similar proteinsi

Entry informationi

Entry nameiQ90XR1_DANRE
AccessioniPrimary (citable) accession number: Q90XR1
Entry historyiIntegrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: June 20, 2018
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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