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Protein
Submitted name:

Claudin 12 isoform fc43a12

Gene

cldn12

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Claudin 12 isoform fc43a12Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:cldn12Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 16

Organism-specific databases

ZFINiZDB-GENE-010328-14. cldn12.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 33HelicalSequence analysisAdd BLAST22
Transmembranei85 – 105HelicalSequence analysisAdd BLAST21
Transmembranei126 – 149HelicalSequence analysisAdd BLAST24
Transmembranei169 – 197HelicalSequence analysisAdd BLAST29

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSDARG00000003927.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000014514.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IE44. Eukaryota.
ENOG410ZR1K. LUCA.
GeneTreeiENSGT00400000022250.
HOVERGENiHBG050986.
OMAiLPSPFWL.
OrthoDBiEOG091G0E18.
TreeFamiTF331972.

Family and domain databases

InterProiIPR013287. Claudin12.
[Graphical view]
PRINTSiPR01872. CLAUDIN12.

Sequencei

Sequence statusi: Complete.

Q90XR1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSCRDIHATN AFAFVIAMLS VGGLTVATLI PQWRTMRLLT FNRNAKNVTV
60 70 80 90 100
YDGLWTKCVR RDGSSGCYYF DSDWYAKVDQ LDLRLLQFCL PTGLLFSSLA
110 120 130 140 150
LLLCLTGMCK TACCSKTPDD IKNSRCLVNS SGCHLVAGML LFLGGAIAMP
160 170 180 190 200
PSVWFLFHTR HLNERYDHLF AVEFGVYVAI GSAGGLILAA LLMFMWYCMC
210 220 230 240 250
KKLPSPFWLP LPEVPTMTQS LSAQPLMTNG LPTPVTYAPQ SFPPAVLDAP
260 270 280 290 300
AFVPMQGYPQ PASTQPMPPH VYMPQMSVPD GYGSEVGASQ VYSYAPSQSY
310 320 330 340
APSQGYAPSQ SYAPSQRYAG HRYSTRSRTS GIEIDIPVLT D
Length:341
Mass (Da):37,471
Last modified:December 1, 2001 - v1
Checksum:i80FC74259A285D36
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX005234 Genomic DNA. No translation available.
CR848685 Genomic DNA. No translation available.
FQ323147 Genomic DNA. No translation available.
AF359433 mRNA. Translation: AAL01840.1.
RefSeqiNP_571848.1. NM_131773.2.
UniGeneiDr.3771.

Genome annotation databases

EnsembliENSDART00000025877; ENSDARP00000014514; ENSDARG00000003927.
ENSDART00000128729; ENSDARP00000107002; ENSDARG00000003927.
GeneIDi81593.
KEGGidre:81593.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX005234 Genomic DNA. No translation available.
CR848685 Genomic DNA. No translation available.
FQ323147 Genomic DNA. No translation available.
AF359433 mRNA. Translation: AAL01840.1.
RefSeqiNP_571848.1. NM_131773.2.
UniGeneiDr.3771.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000014514.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000025877; ENSDARP00000014514; ENSDARG00000003927.
ENSDART00000128729; ENSDARP00000107002; ENSDARG00000003927.
GeneIDi81593.
KEGGidre:81593.

Organism-specific databases

CTDi9069.
ZFINiZDB-GENE-010328-14. cldn12.

Phylogenomic databases

eggNOGiENOG410IE44. Eukaryota.
ENOG410ZR1K. LUCA.
GeneTreeiENSGT00400000022250.
HOVERGENiHBG050986.
OMAiLPSPFWL.
OrthoDBiEOG091G0E18.
TreeFamiTF331972.

Gene expression databases

BgeeiENSDARG00000003927.

Family and domain databases

InterProiIPR013287. Claudin12.
[Graphical view]
PRINTSiPR01872. CLAUDIN12.
ProtoNetiSearch...

Entry informationi

Entry nameiQ90XR1_DANRE
AccessioniPrimary (citable) accession number: Q90XR1
Entry historyi
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: September 7, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.