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Q90XB2 (Q90XB2_CHICK) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length222 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains C-type lectin domain. SAAS SAAS001304

Ontologies

Keywords
   DomainSignal EMBL AAK97540.1
   PTMDisulfide bond SAAS SAAS001304
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functioncarbohydrate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 1818 Potential EMBL AAK97540.1
Chain19 – 222204 Potential EMBL AAK97540.1
PRO_5000061299

Sequences

Sequence LengthMass (Da)Tools
Q90XB2 [UniParc].

Last modified December 1, 2001. Version 1.
Checksum: 97371A3C53303872

FASTA22224,721
        10         20         30         40         50         60 
MLSYSFCMIA AAVALLTPCH AQNCAGAPEL PSIPGVSGLL GLGALKRYFG SLLWPYGEEK 

        70         80         90        100        110        120 
LPECQWLQRQ QDLSTSSDDE LGNVLLNLRQ RILQLEGVLA LDGKITKVGE KIFASNGKEV 

       130        140        150        160        170        180 
NFSSALESCE ETGGTLATPM NEEENKAIMG IVKQYNRYAY LGIKESDTAG QFKYVNNQPL 

       190        200        210        220 
NYTSWQQYEP NGKGTEKCVE MYTDGNWKDR KCNLYRLTVC EY 

« Hide

References

« Hide 'large scale' references
[1]"The chicken homolog of surfactant protein A has only three collagen-like Gly-Xaa-Yaa repeats and contain a new putative coil structure between the collagen region and the alpha-helical coil-coil region."
Vitved L., Hansen S., Teisner B., Koch C., Juul-Madsen H., Holmskov U., Salomonsen J., Skjodt K.
Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Lung EMBL AAK97540.1.
[2]"Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution."
International Chicken Genome Sequencing Consortium
Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C., Ponting C.P., Bork P., Burt D.W., Groenen M.A.M., Delany M.E., Dodgson J.B., Chinwalla A.T., Cliften P.F., Clifton S.W., Delehaunty K.D., Fronick C., Fulton R.S., Graves T.A. expand/collapse author list , Kremitzki C., Layman D., Magrini V., McPherson J.D., Miner T.L., Minx P., Nash W.E., Nhan M.N., Nelson J.O., Oddy L.G., Pohl C.S., Randall-Maher J., Smith S.M., Wallis J.W., Yang S.-P., Romanov M.N., Rondelli C.M., Paton B., Smith J., Morrice D., Daniels L., Tempest H.G., Robertson L., Masabanda J.S., Griffin D.K., Vignal A., Fillon V., Jacobbson L., Kerje S., Andersson L., Crooijmans R.P., Aerts J., van der Poel J.J., Ellegren H., Caldwell R.B., Hubbard S.J., Grafham D.V., Kierzek A.M., McLaren S.R., Overton I.M., Arakawa H., Beattie K.J., Bezzubov Y., Boardman P.E., Bonfield J.K., Croning M.D.R., Davies R.M., Francis M.D., Humphray S.J., Scott C.E., Taylor R.G., Tickle C., Brown W.R.A., Rogers J., Buerstedde J.-M., Wilson S.A., Stubbs L., Ovcharenko I., Gordon L., Lucas S., Miller M.M., Inoko H., Shiina T., Kaufman J., Salomonsen J., Skjoedt K., Wong G.K.-S., Wang J., Liu B., Wang J., Yu J., Yang H., Nefedov M., Koriabine M., Dejong P.J., Goodstadt L., Webber C., Dickens N.J., Letunic I., Suyama M., Torrents D., von Mering C., Zdobnov E.M., Makova K., Nekrutenko A., Elnitski L., Eswara P., King D.C., Yang S.-P., Tyekucheva S., Radakrishnan A., Harris R.S., Chiaromonte F., Taylor J., He J., Rijnkels M., Griffiths-Jones S., Ureta-Vidal A., Hoffman M.M., Severin J., Searle S.M.J., Law A.S., Speed D., Waddington D., Cheng Z., Tuzun E., Eichler E., Bao Z., Flicek P., Shteynberg D.D., Brent M.R., Bye J.M., Huckle E.J., Chatterji S., Dewey C., Pachter L., Kouranov A., Mourelatos Z., Hatzigeorgiou A.G., Paterson A.H., Ivarie R., Brandstrom M., Axelsson E., Backstrom N., Berlin S., Webster M.T., Pourquie O., Reymond A., Ucla C., Antonarakis S.E., Long M., Emerson J.J., Betran E., Dupanloup I., Kaessmann H., Hinrichs A.S., Bejerano G., Furey T.S., Harte R.A., Raney B., Siepel A., Kent W.J., Haussler D., Eyras E., Castelo R., Abril J.F., Castellano S., Camara F., Parra G., Guigo R., Bourque G., Tesler G., Pevzner P.A., Smit A., Fulton L.A., Mardis E.R., Wilson R.K.
Nature 432:695-716(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Red jungle fowl Ensembl ENSGALP00000003937 Ensembl ENSGALP00000042366.
[3]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Red jungle fowl Ensembl ENSGALP00000003937.
[4]Ensembl
Submitted (MAY-2013) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Red jungle fowl Ensembl ENSGALP00000042366.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AADN03005176 Genomic DNA. No translation available.
AF411083 mRNA. Translation: AAK97540.1.
RefSeqNP_989937.1. NM_204606.1.
UniGeneGga.936.

3D structure databases

ProteinModelPortalQ90XB2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING9031.ENSGALP00000003937.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSGALT00000003946; ENSGALP00000003937; ENSGALG00000002503.
ENSGALT00000044265; ENSGALP00000042366; ENSGALG00000002503.
GeneID395308.
KEGGgga:395308.

Organism-specific databases

CTD653509.

Phylogenomic databases

eggNOGNOG315755.
GeneTreeENSGT00700000104102.
HOGENOMHOG000085660.
HOVERGENHBG108270.
InParanoidQ90XB2.
KOK10067.
OMAQYNRYAY.
OrthoDBEOG7HXCVB.
PhylomeDBQ90XB2.
TreeFamTF330481.

Family and domain databases

Gene3D3.10.100.10. 1 hit.
InterProIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR018378. C-type_lectin_CS.
IPR016187. C-type_lectin_fold.
[Graphical view]
PfamPF00059. Lectin_C. 1 hit.
[Graphical view]
SMARTSM00034. CLECT. 1 hit.
[Graphical view]
SUPFAMSSF56436. SSF56436. 1 hit.
PROSITEPS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20815393.

Entry information

Entry nameQ90XB2_CHICK
AccessionPrimary (citable) accession number: Q90XB2
Entry history
Integrated into UniProtKB/TrEMBL: December 1, 2001
Last sequence update: December 1, 2001
Last modified: July 9, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)