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Q90662 (Q90662_CHICK) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1604 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the intermediate filament family. RuleBase RU000685

Ontologies

Keywords
   Cellular componentIntermediate filament RuleBase RU000685 SAAS SAAS018039
   DomainCoiled coil SAAS SAAS018039
Gene Ontology (GO)
   Cellular_componentintermediate filament

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural molecule activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q90662 [UniParc].

Last modified May 1, 2000. Version 2.
Checksum: C30A09488C519041

FASTA1,604182,188
        10         20         30         40         50         60 
MWRRWEAGWD EKRELQELNS RLRFSVSRVR ELEEENRFLA RELAELREQE LIGLRVPEQE 

        70         80         90        100        110        120 
LAWLRMQLEE LSQAKLEAEL ERDGLRRELE QLQLLGAEVL ATRRRLEPEL AGQRQLLQRL 

       130        140        150        160        170        180 
QGECVALEEL LLQLQDEHGH LAERQRREVV EIRELRMDLA ALPPPLSALS LEELEETYEM 

       190        200        210        220        230        240 
LLSQSCQETL LRYQEQIQRL QEQEAQRSRE NLELLREESR QCRQHLEDLH RQGQELCGLR 

       250        260        270        280        290        300 
ERLEQELLAM QDRHGAEVEE YQRIIDALEE EKQFLTMSIT DYLRDYQELL QVKAGLILEI 

       310        320        330        340        350        360 
ETYRALLEGK SNQWVITWRD QLIGKLPQDI INTSYNYTDM YSTYQERNQN KTSPAIRITD 

       370        380        390        400        410        420 
TRHRIPATNT SSSARYSAQS TQAGSQTAVS GTAFGKGVLG SIYRPSTTIR KDERIVTDHK 

       430        440        450        460        470        480 
ELRTYTPGYS SWKHTETQQK TIPERKKTEV TSSSTVSFSK QSTHAERSDK DNKADTKPKI 

       490        500        510        520        530        540 
SESLRTKSNF SKFPTYELNT SSKPSVYEET ITETRTTIKE KRGGSKPTEE GTSLPKEKDK 

       550        560        570        580        590        600 
LEKQTKEEKR KVDEKTFVEE RSVNFGRQTD AKMGIEQKKY VREEVISQKV AESDISNART 

       610        620        630        640        650        660 
LKKESSKKDT DVSFESKSKE VIEIPITLER PAPDKVSQKK NEDISSQDFK TSRGRETGDH 

       670        680        690        700        710        720 
VTKPAEIHKI RVSESDLRDE EKTSDRSHKM KTLATESIAE NIAADILKSF TPSSSSEVST 

       730        740        750        760        770        780 
DTKVTSSSKQ EQPDDGKIRT EITVQSRVQE NIDVSAEADR GSLSNQDVRK VLESAEGTPS 

       790        800        810        820        830        840 
KQEIENIVRH GLKGSGVAKN MSVNVEIVEE TVDYTTDERT DFSTPFEVEE VEDTFPEREK 

       850        860        870        880        890        900 
RYGDDEQDIT LTYEDLKKKK QRHESFTHVE EVTEEDDSPI EQKYFVSVPD DHPIINEKDD 

       910        920        930        940        950        960 
DSVYGQIHIE EESTIKYSWQ DDFVQGTQSK RDEGVSSPEE TYRVVGEEAA AHILKEEHPK 

       970        980        990       1000       1010       1020 
AGTSHVESVV IEKEIKIPQE FQASIKGLLS KETKDPKQQL KEALEQLGGS LPESVKEELS 

      1030       1040       1050       1060       1070       1080 
ALTKESQADS SNLEFDIKKV HQTEEGGLLT IVAEVNLSQT INADEFDIAQ LGEIIAGEKE 

      1090       1100       1110       1120       1130       1140 
KTTSHSLKRD KLERVAGGKI STETDVSARS DIYTPVANQE VYKSSTVRKT GSTGYHTTEK 

      1150       1160       1170       1180       1190       1200 
VIYDSSILET ANLGEDSHSP ESTDESKSVR HIRVGPTEVQ RFEQIVYEGP GSEMLGLSAT 

      1210       1220       1230       1240       1250       1260 
EDVVQTEGTS EMSHSVKHFK LGPKEIQTTE EVIYRGPITT TVEEIDSGNL SQQTFSSDIN 

      1270       1280       1290       1300       1310       1320 
RSTRHVTVGS RQVIEEVSFE GLGSDSLELN SSGHLSQSEG SVDVSRSVRQ FRLHPKEIHS 

      1330       1340       1350       1360       1370       1380 
EQVIFEGPIS GKVEVSDSRD FSQTESSVRH IQLGPKEFMT AEKVIYQGPI TEHIEISEVG 

      1390       1400       1410       1420       1430       1440 
DQTHSESSVK HFRLGQTGVR TTERIIYQGS LSETPELINK GHLSENEGSS DISTSFRHVR 

      1450       1460       1470       1480       1490       1500 
ITPVETQTEQ IIFTRPISET LEDHSQARES SESSSSMKHV KVGSSGTSFT FQMDVSNVGG 

      1510       1520       1530       1540       1550       1560 
VSMAESEEQA TVVISNKQDP SVNQSQFRVE SDHSGDSENK RSYIHSSFSQ DHVENVVEKS 

      1570       1580       1590       1600 
DFDKTVQLQR MVDQRSVISD DKKVALLYLD HEEEDDEEND GQWF 

« Hide

References

[1]"Synemin contains the rod domain of intermediate filaments."
Becker B., Bellin R.M., Sernett S.W., Huiatt T.W., Robson R.M.
Biochem. Biophys. Res. Commun. 213:796-802(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Gizzard muscle EMBL AAA80653.2.
[2]"Molecular characteristics and interactions of the intermediate filament protein synemin. Interactions with alpha-actinin may anchor synemin-containing heterofilaments."
Bellin R.M., Sernett S.W., Becker B., Ip W., Huiatt T.W., Robson R.M.
J. Biol. Chem. 274:29493-29499(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Tissue: Gizzard muscle EMBL AAA80653.2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U28143 mRNA. Translation: AAA80653.2.
PIRI50721.
RefSeqNP_990140.2. NM_204809.2.
UniGeneGga.4306.

3D structure databases

ProteinModelPortalQ90662.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING9031.ENSGALP00000033263.

Proteomic databases

PaxDbQ90662.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID395599.
KEGGgga:395599.

Organism-specific databases

CTD23336.

Phylogenomic databases

eggNOGNOG139727.
HOGENOMHOG000154476.
HOVERGENHBG008974.
KOK10376.
PhylomeDBQ90662.

Family and domain databases

InterProIPR001664. IF.
IPR018039. Intermediate_filament_CS.
[Graphical view]
PANTHERPTHR23239. PTHR23239. 1 hit.
PfamPF00038. Filament. 1 hit.
[Graphical view]
PROSITEPS00226. IF. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20815672.
PROQ90662.

Entry information

Entry nameQ90662_CHICK
AccessionPrimary (citable) accession number: Q90662
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: May 1, 2000
Last modified: July 9, 2014
This is version 75 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)