Q90662 (Q90662_CHICK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Submitted name: Synemin EMBL AAA80653.2
Organism	Gallus gallus (Chicken) EMBL AAA80653.2
Taxonomic identifier	9031 [NCBI]
Taxonomic lineage	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Sauropsida › Sauria › Archosauria › Dinosauria › Saurischia › Theropoda › Coelurosauria › Aves › Neognathae › Galliformes › Phasianidae › Phasianinae › Gallus

Protein attributes

Sequence length	1604 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the intermediate filament family. RuleBase RU000685

Ontologies

Keywords
Cellular component	Intermediate filament RuleBase RU000685 SAAS SAAS018039
Domain	Coiled coil SAAS SAAS018039
Gene Ontology (GO)
Cellular_component	intermediate filament Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural molecule activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q90662 [UniParc]. Last modified May 1, 2000. Version 2. Checksum: C30A09488C519041	FASTA	1,604	182,188
	10 20 30 40 50 60 MWRRWEAGWD EKRELQELNS RLRFSVSRVR ELEEENRFLA RELAELREQE LIGLRVPEQE 70 80 90 100 110 120 LAWLRMQLEE LSQAKLEAEL ERDGLRRELE QLQLLGAEVL ATRRRLEPEL AGQRQLLQRL 130 140 150 160 170 180 QGECVALEEL LLQLQDEHGH LAERQRREVV EIRELRMDLA ALPPPLSALS LEELEETYEM 190 200 210 220 230 240 LLSQSCQETL LRYQEQIQRL QEQEAQRSRE NLELLREESR QCRQHLEDLH RQGQELCGLR 250 260 270 280 290 300 ERLEQELLAM QDRHGAEVEE YQRIIDALEE EKQFLTMSIT DYLRDYQELL QVKAGLILEI 310 320 330 340 350 360 ETYRALLEGK SNQWVITWRD QLIGKLPQDI INTSYNYTDM YSTYQERNQN KTSPAIRITD 370 380 390 400 410 420 TRHRIPATNT SSSARYSAQS TQAGSQTAVS GTAFGKGVLG SIYRPSTTIR KDERIVTDHK 430 440 450 460 470 480 ELRTYTPGYS SWKHTETQQK TIPERKKTEV TSSSTVSFSK QSTHAERSDK DNKADTKPKI 490 500 510 520 530 540 SESLRTKSNF SKFPTYELNT SSKPSVYEET ITETRTTIKE KRGGSKPTEE GTSLPKEKDK 550 560 570 580 590 600 LEKQTKEEKR KVDEKTFVEE RSVNFGRQTD AKMGIEQKKY VREEVISQKV AESDISNART 610 620 630 640 650 660 LKKESSKKDT DVSFESKSKE VIEIPITLER PAPDKVSQKK NEDISSQDFK TSRGRETGDH 670 680 690 700 710 720 VTKPAEIHKI RVSESDLRDE EKTSDRSHKM KTLATESIAE NIAADILKSF TPSSSSEVST 730 740 750 760 770 780 DTKVTSSSKQ EQPDDGKIRT EITVQSRVQE NIDVSAEADR GSLSNQDVRK VLESAEGTPS 790 800 810 820 830 840 KQEIENIVRH GLKGSGVAKN MSVNVEIVEE TVDYTTDERT DFSTPFEVEE VEDTFPEREK 850 860 870 880 890 900 RYGDDEQDIT LTYEDLKKKK QRHESFTHVE EVTEEDDSPI EQKYFVSVPD DHPIINEKDD 910 920 930 940 950 960 DSVYGQIHIE EESTIKYSWQ DDFVQGTQSK RDEGVSSPEE TYRVVGEEAA AHILKEEHPK 970 980 990 1000 1010 1020 AGTSHVESVV IEKEIKIPQE FQASIKGLLS KETKDPKQQL KEALEQLGGS LPESVKEELS 1030 1040 1050 1060 1070 1080 ALTKESQADS SNLEFDIKKV HQTEEGGLLT IVAEVNLSQT INADEFDIAQ LGEIIAGEKE 1090 1100 1110 1120 1130 1140 KTTSHSLKRD KLERVAGGKI STETDVSARS DIYTPVANQE VYKSSTVRKT GSTGYHTTEK 1150 1160 1170 1180 1190 1200 VIYDSSILET ANLGEDSHSP ESTDESKSVR HIRVGPTEVQ RFEQIVYEGP GSEMLGLSAT 1210 1220 1230 1240 1250 1260 EDVVQTEGTS EMSHSVKHFK LGPKEIQTTE EVIYRGPITT TVEEIDSGNL SQQTFSSDIN 1270 1280 1290 1300 1310 1320 RSTRHVTVGS RQVIEEVSFE GLGSDSLELN SSGHLSQSEG SVDVSRSVRQ FRLHPKEIHS 1330 1340 1350 1360 1370 1380 EQVIFEGPIS GKVEVSDSRD FSQTESSVRH IQLGPKEFMT AEKVIYQGPI TEHIEISEVG 1390 1400 1410 1420 1430 1440 DQTHSESSVK HFRLGQTGVR TTERIIYQGS LSETPELINK GHLSENEGSS DISTSFRHVR 1450 1460 1470 1480 1490 1500 ITPVETQTEQ IIFTRPISET LEDHSQARES SESSSSMKHV KVGSSGTSFT FQMDVSNVGG 1510 1520 1530 1540 1550 1560 VSMAESEEQA TVVISNKQDP SVNQSQFRVE SDHSGDSENK RSYIHSSFSQ DHVENVVEKS 1570 1580 1590 1600 DFDKTVQLQR MVDQRSVISD DKKVALLYLD HEEEDDEEND GQWF

References

[1]	"Synemin contains the rod domain of intermediate filaments." Becker B., Bellin R.M., Sernett S.W., Huiatt T.W., Robson R.M. Biochem. Biophys. Res. Commun. 213:796-802(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Gizzard muscle EMBL AAA80653.2.
[2]	"Molecular characteristics and interactions of the intermediate filament protein synemin. Interactions with alpha-actinin may anchor synemin-containing heterofilaments." Bellin R.M., Sernett S.W., Becker B., Ip W., Huiatt T.W., Robson R.M. J. Biol. Chem. 274:29493-29499(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Tissue: Gizzard muscle EMBL AAA80653.2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U28143 mRNA. Translation: AAA80653.2.
IPI	IPI00593500.
PIR	I50721.
RefSeq	NP_990140.1. NM_204809.1.
UniGene	Gga.4306.
3D structure databases
HSSP	HSSP built from PDB template 1GK7 based on UniProtKB P08670.
ProteinModelPortal	Q90662.
ModBase	Search...
Protein-protein interaction databases
STRING	9031.ENSGALP00000033263.
Proteomic databases
PaxDb	Q90662.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	395599.
KEGG	gga:395599.
Organism-specific databases
CTD	23336.
Phylogenomic databases
eggNOG	NOG139727.
HOGENOM	HOG000154476.
HOVERGEN	HBG008974.
KO	K10376.
OrthoDB	EOG4F1X2N.
Family and domain databases
InterPro	IPR016044. F. IPR001664. IF. IPR018039. Intermediate_filament_CS. [Graphical view]
PANTHER	PTHR23239. PTHR23239. 1 hit.
Pfam	PF00038. Filament. 1 hit. [Graphical view]
PROSITE	PS00226. IF. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	20815672.

Entry information

Entry name

Q90662_CHICK

Accession

Primary (citable) accession number: Q90662

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	May 1, 2000
Last modified:	April 3, 2013
This is version 66 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)