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Protein
Submitted name:

Snail2

Gene

snai1b

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cardiac muscle progenitor cell migration to the midline involved in heart field formation Source: ZFIN
  • cardioblast migration to the midline involved in heart field formation Source: ZFIN
  • cell migration involved in gastrulation Source: ZFIN
  • heart development Source: ZFIN
  • mesodermal cell migration Source: ZFIN
  • negative regulation of cell-cell adhesion Source: ZFIN
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Snail2Imported
Gene namesi
Name:snai1bImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-980526-514. snai1b.

PTM / Processingi

Proteomic databases

PaxDbiQ90414.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000067651.

Structurei

3D structure databases

ProteinModelPortaliQ90414.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini104 – 131C2H2-typeInterPro annotationAdd BLAST28
Domaini147 – 170C2H2-typeInterPro annotationAdd BLAST24
Domaini173 – 200C2H2-typeInterPro annotationAdd BLAST28
Domaini201 – 228C2H2-typeInterPro annotationAdd BLAST28

Phylogenomic databases

eggNOGiKOG2462. Eukaryota.
ENOG41106JS. LUCA.
HOGENOMiHOG000261665.
HOVERGENiHBG007477.
PhylomeDBiQ90414.

Family and domain databases

Gene3Di3.30.160.60. 3 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 4 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q90414-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRSFLVKKY FTNKKPNYSE LESQTDRRYA VVPQCFPLDD PLVPKYPSML
60 70 80 90 100
VWSSSALPFP GVSSSVSCPP APLDLSSPSS SSSSGEEDDC RTSDPPSPDP
110 120 130 140 150
SDRFQCAHCG KSCSSPACLS RHQLAHCSPQ DGISGRTSSS PAPGPPFHCK
160 170 180 190 200
HCPKEYNSLG ALKMHIRSHT LPCVCSTCGK AFSRPWLLRG HIRTHTGERP
210 220 230 240 250
FSCPHCNRAF ADRSNLRAHL QTHSEVKKYQ CGSCSRRTFS RMSLLHKHTL

SGCCPAL
Length:257
Mass (Da):28,250
Last modified:November 1, 1996 - v1
Checksum:i8E6D395BCD2C3E98
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U24225 mRNA. Translation: AAA87196.1.
UniGeneiDr.625.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U24225 mRNA. Translation: AAA87196.1.
UniGeneiDr.625.

3D structure databases

ProteinModelPortaliQ90414.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000067651.

Proteomic databases

PaxDbiQ90414.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

ZFINiZDB-GENE-980526-514. snai1b.

Phylogenomic databases

eggNOGiKOG2462. Eukaryota.
ENOG41106JS. LUCA.
HOGENOMiHOG000261665.
HOVERGENiHBG007477.
PhylomeDBiQ90414.

Family and domain databases

Gene3Di3.30.160.60. 3 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 4 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 4 hits.
PS50157. ZINC_FINGER_C2H2_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ90414_DANRE
AccessioniPrimary (citable) accession number: Q90414
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: March 16, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.