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Protein

ELAV-like protein

Gene

elavl4

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRibonucleoproteinImported, RNA-bindingUniRule annotationSAAS annotation, Viral nucleoproteinImported

Names & Taxonomyi

Protein namesi
Recommended name:
ELAV-like proteinUniRule annotation
Gene namesi
Name:elavl4Imported
Synonyms:elrDImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-990415-246. elavl4.

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Virion

Expressioni

Gene expression databases

BgeeiENSDARG00000045639.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000116684.

Structurei

3D structure databases

ProteinModelPortaliQ90409.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini44 – 122RRM (RNA recognition motif)InterPro annotationAdd BLAST79
Domaini130 – 213RRM (RNA recognition motif)InterPro annotationAdd BLAST84
Domaini284 – 362RRM (RNA recognition motif)InterPro annotationAdd BLAST79

Sequence similaritiesi

Belongs to the RRM elav family.UniRule annotation

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG0145. Eukaryota.
ENOG410XP7S. LUCA.
HOGENOMiHOG000231162.
HOVERGENiHBG002295.
KOiK13208.
PhylomeDBiQ90409.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiView protein in InterPro
IPR006548. ELAD_HUD_SF.
IPR002343. Hud_Sxl_RNA.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
PfamiView protein in Pfam
PF00076. RRM_1. 3 hits.
PRINTSiPR00961. HUDSXLRNA.
SMARTiView protein in SMART
SM00360. RRM. 3 hits.
SUPFAMiSSF54928. SSF54928. 3 hits.
TIGRFAMsiTIGR01661. ELAV_HUD_SF. 1 hit.
PROSITEiView protein in PROSITE
PS50102. RRM. 3 hits.

Sequencei

Sequence statusi: Complete.

Q90409-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIISNMEPQV TNGPNSATAN GPSSNSRSCP SPMQTGGSND DSKTNLIVNY
60 70 80 90 100
LPQNMTQEEF RSLFGSIGEI ESCKLVRDKI TGQSLGYGFV NYIDPKDAEK
110 120 130 140 150
AINTLNGLRL QTKTIKVSYA RPSSASIRDA NLYVSGLPKT MTQKELEQLF
160 170 180 190 200
SQYGRIITSR ILVDQVTGPT GGSRGVGFIR FDKRIEAEEA IKGLNGQKPS
210 220 230 240 250
GAAEPITVKF ANNPSQKTSQ ALLSQLYQSP NRRYPGPLHH QAQRFRLDNL
260 270 280 290 300
LNMAYGVKRF SPITIDSMTS LVGMNIPGHT GTGWCIFVYN LSPDSDESVL
310 320 330 340 350
WQLFGPFGAV NNVKVIRDFN TNKCKGFGFV TMTNYDEAAM AIASLNGYRL
360
GDRVLQVSFK TNKTHKS
Length:367
Mass (Da):40,318
Last modified:November 1, 1996 - v1
Checksum:i473A5849F3DA0CFA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U17602 mRNA. Translation: AAA96940.1.
BC065965 mRNA. Translation: AAH65965.2.
PIRiI50513.
RefSeqiNP_001231529.1. NM_001244600.1.
NP_001231530.1. NM_001244601.1.
NP_571528.2. NM_131453.3.
UniGeneiDr.75061.

Genome annotation databases

GeneIDi30737.
KEGGidre:30737.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U17602 mRNA. Translation: AAA96940.1.
BC065965 mRNA. Translation: AAH65965.2.
PIRiI50513.
RefSeqiNP_001231529.1. NM_001244600.1.
NP_001231530.1. NM_001244601.1.
NP_571528.2. NM_131453.3.
UniGeneiDr.75061.

3D structure databases

ProteinModelPortaliQ90409.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000116684.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi30737.
KEGGidre:30737.

Organism-specific databases

CTDi1996.
ZFINiZDB-GENE-990415-246. elavl4.

Phylogenomic databases

eggNOGiKOG0145. Eukaryota.
ENOG410XP7S. LUCA.
HOGENOMiHOG000231162.
HOVERGENiHBG002295.
KOiK13208.
PhylomeDBiQ90409.

Gene expression databases

BgeeiENSDARG00000045639.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiView protein in InterPro
IPR006548. ELAD_HUD_SF.
IPR002343. Hud_Sxl_RNA.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
PfamiView protein in Pfam
PF00076. RRM_1. 3 hits.
PRINTSiPR00961. HUDSXLRNA.
SMARTiView protein in SMART
SM00360. RRM. 3 hits.
SUPFAMiSSF54928. SSF54928. 3 hits.
TIGRFAMsiTIGR01661. ELAV_HUD_SF. 1 hit.
PROSITEiView protein in PROSITE
PS50102. RRM. 3 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiQ90409_DANRE
AccessioniPrimary (citable) accession number: Q90409
Secondary accession number(s): Q6NZU5
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 15, 2017
This is version 118 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.