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Protein
Submitted name:

Y-Box binding protein

Gene

pYBalpha

Organism
Columba livia (Rock dove)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Y-Box binding proteinImported
Gene namesi
Name:pYBalphaImported
OrganismiColumba livia (Rock dove)Imported
Taxonomic identifieri8932 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeColumbiformesColumbidaeColumba

Structurei

3D structure databases

ProteinModelPortaliQ90376.
SMRiQ90376. Positions 15-92.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini23 – 9169CSPInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 CSD (cold-shock) domain.UniRule annotation

Phylogenomic databases

HOVERGENiHBG008757.
KOiK09276.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q90376-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSEAETQPP AGGDKKVIAT KVLGTVKWFN VRNGYGFINR NDTKEDVFVH
60 70 80 90 100
QTAIKKNNPR KYLRSVGDGE TVEFDVVEGE KGAEAANVTG PGGVPVQGSK
110 120 130 140 150
YAADRNHYRR YPRRRGPPRN YQQNYQNSES GEKNEGAENI PEGQGQQRRP
160 170 180 190 200
YRRRRYPPYY MRRPYGRRPQ YTNPPVQGEI VEGADNQGAG EQGRPVRQNM
210 220 230 240 250
YRGYRPRFRR GPPRQRQPRE DGNEEDKENQ GDETQSQQPP QRRYRRNFNY
260 270 280
RRRRPENPKP QDGKETKTAE PPAENTSAPE AEQGGAE
Length:287
Mass (Da):32,963
Last modified:November 1, 1996 - v1
Checksum:i1770B83E824A0B35
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U43513 mRNA. Translation: AAB01787.1.
RefSeqiNP_001269771.1. NM_001282842.1.

Genome annotation databases

GeneIDi102094564.
KEGGiclv:102094564.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U43513 mRNA. Translation: AAB01787.1.
RefSeqiNP_001269771.1. NM_001282842.1.

3D structure databases

ProteinModelPortaliQ90376.
SMRiQ90376. Positions 15-92.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi102094564.
KEGGiclv:102094564.

Organism-specific databases

CTDi4904.

Phylogenomic databases

HOVERGENiHBG008757.
KOiK09276.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Pratt S.L., Horseman N.D.
    Submitted (DEC-1995) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: RollerImported.

Entry informationi

Entry nameiQ90376_COLLI
AccessioniPrimary (citable) accession number: Q90376
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: December 9, 2015
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.