Q90320 (Q90320_CYPCA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cdx1 protein EMBL CAA56695.1

Gene names

Name:

cdx1 EMBL CAA56695.1

Organism

Cyprinus carpio (Common carp) EMBL CAA56695.1

Taxonomic identifier

7962 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Cyprinus

Protein attributes

Sequence length	324 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Subcellular location	Nucleus By similarity RuleBase RU000682.
Sequence similarities	Contains 1 homeobox DNA-binding domain. SAAS SAAS020479

Ontologies

Keywords
Cellular component	Nucleus RuleBase RU000682 SAAS SAAS020479
Domain	Homeobox RuleBase RU000682 SAAS SAAS020479
Ligand	DNA-binding RuleBase RU000682 SAAS SAAS020479
Gene Ontology (GO)
Biological_process	multicellular organismal development Inferred from electronic annotation. Source: InterPro
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro transcription regulatory region sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q90320 [UniParc]. Last modified November 1, 1996. Version 1. Checksum: 0E092B545E1D9538	FASTA	324	36,387
	10 20 30 40 50 60 MYVGYLLDKE GSMYHQGSVR RSGISLPPQN FVSTPQYSDF TGYHHVPNMD THAQSAGAWG 70 80 90 100 110 120 PPYGAPREDW GAYSLGPPNT ISAPMSSSSP GQVSYCSSDY NAMHGPGSAV LPPPPENISV 130 140 150 160 170 180 GQLSPERERR NSYQWMSKTV QSSSTGKTRT KEKYRVVYTD HQRLELEKEF HFNRYITIRR 190 200 210 220 230 240 KSELAVNLGL SERQVKIWFQ NRRAKERKLI KKKLGVSDGS GGSVHSDPGS VSPLPVPGVT 250 260 270 280 290 300 ESVRHTRFSV PTPRNERLTI YEEHTASYCH SVNSNLKDPT LTEHSNTLKG QNRSGPLAWT 310 320 KRITNYYTTG IKARVVDYHR RITS

References

[1]	"Expression of carp-cdx1, a caudal homolog, in embryos of the carp, Cyprinus carpio." Stroband H.W.J., Stevens C., te Kronnie G., Samallo J., Schipper H., Kramer B., Timmermans L.P.M. Roux's Arch. Dev. Biol. 204:369-377(1995) Cited for: NUCLEOTIDE SEQUENCE. Tissue: Whole embryo EMBL CAA56695.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	X80668 mRNA. Translation: CAA56695.1.
PIR	I50125.
3D structure databases
HSSP	HSSP built from PDB template 9ANT based on UniProtKB P02833.
ProteinModelPortal	Q90320.
SMR	Q90320. Positions 151-213.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Phylogenomic databases
HOVERGEN	HBG005302.
Family and domain databases
Gene3D	1.10.10.60. 1 hit.
InterPro	IPR006820. Caudal_activation_dom. IPR017970. Homeobox_CS. IPR020479. Homeobox_metazoa. IPR001356. Homeodomain. IPR009057. Homeodomain-like. IPR000047. HTH_motif. [Graphical view]
Pfam	PF04731. Caudal_act. 1 hit. PF00046. Homeobox. 1 hit. [Graphical view]
PRINTS	PR00024. HOMEOBOX. PR00031. HTHREPRESSR.
SMART	SM00389. HOX. 1 hit. [Graphical view]
SUPFAM	SSF46689. Homeodomain_like. 1 hit.
PROSITE	PS00027. HOMEOBOX_1. 1 hit. PS50071. HOMEOBOX_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q90320_CYPCA

Accession

Primary (citable) accession number: Q90320

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	November 1, 1996
Last modified:	March 6, 2013
This is version 76 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)