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Q90320

- Q90320_CYPCA

UniProt

Q90320 - Q90320_CYPCA

Protein
Submitted name:

Cdx1 protein

Gene

cdx1

Organism
Cyprinus carpio (Common carp)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 80 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. sequence-specific DNA binding transcription factor activity Source: InterPro
    2. transcription regulatory region sequence-specific DNA binding Source: InterPro

    GO - Biological processi

    1. multicellular organismal development Source: InterPro

    Keywords - Ligandi

    DNA-bindingUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Cdx1 proteinImported
    Gene namesi
    Name:cdx1Imported
    OrganismiCyprinus carpio (Common carp)Imported
    Taxonomic identifieri7962 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeCyprinus

    Subcellular locationi

    Nucleus UniRule annotationSAAS annotation

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    NucleusUniRule annotationSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliQ90320.
    SMRiQ90320. Positions 151-213.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains homeobox DNA-binding domain.SAAS annotation

    Keywords - Domaini

    HomeoboxUniRule annotationSAAS annotation

    Phylogenomic databases

    HOVERGENiHBG005302.

    Family and domain databases

    Gene3Di1.10.10.60. 1 hit.
    InterProiIPR006820. Caudal_activation_dom.
    IPR017970. Homeobox_CS.
    IPR001356. Homeobox_dom.
    IPR020479. Homeobox_metazoa.
    IPR009057. Homeodomain-like.
    IPR000047. HTH_motif.
    [Graphical view]
    PfamiPF04731. Caudal_act. 1 hit.
    PF00046. Homeobox. 1 hit.
    [Graphical view]
    PRINTSiPR00024. HOMEOBOX.
    PR00031. HTHREPRESSR.
    SMARTiSM00389. HOX. 1 hit.
    [Graphical view]
    SUPFAMiSSF46689. SSF46689. 1 hit.
    PROSITEiPS00027. HOMEOBOX_1. 1 hit.
    PS50071. HOMEOBOX_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q90320-1 [UniParc]FASTAAdd to Basket

    « Hide

    MYVGYLLDKE GSMYHQGSVR RSGISLPPQN FVSTPQYSDF TGYHHVPNMD    50
    THAQSAGAWG PPYGAPREDW GAYSLGPPNT ISAPMSSSSP GQVSYCSSDY 100
    NAMHGPGSAV LPPPPENISV GQLSPERERR NSYQWMSKTV QSSSTGKTRT 150
    KEKYRVVYTD HQRLELEKEF HFNRYITIRR KSELAVNLGL SERQVKIWFQ 200
    NRRAKERKLI KKKLGVSDGS GGSVHSDPGS VSPLPVPGVT ESVRHTRFSV 250
    PTPRNERLTI YEEHTASYCH SVNSNLKDPT LTEHSNTLKG QNRSGPLAWT 300
    KRITNYYTTG IKARVVDYHR RITS 324
    Length:324
    Mass (Da):36,387
    Last modified:November 1, 1996 - v1
    Checksum:i0E092B545E1D9538
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X80668 mRNA. Translation: CAA56695.1.
    PIRiI50125.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X80668 mRNA. Translation: CAA56695.1 .
    PIRi I50125.

    3D structure databases

    ProteinModelPortali Q90320.
    SMRi Q90320. Positions 151-213.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Phylogenomic databases

    HOVERGENi HBG005302.

    Family and domain databases

    Gene3Di 1.10.10.60. 1 hit.
    InterProi IPR006820. Caudal_activation_dom.
    IPR017970. Homeobox_CS.
    IPR001356. Homeobox_dom.
    IPR020479. Homeobox_metazoa.
    IPR009057. Homeodomain-like.
    IPR000047. HTH_motif.
    [Graphical view ]
    Pfami PF04731. Caudal_act. 1 hit.
    PF00046. Homeobox. 1 hit.
    [Graphical view ]
    PRINTSi PR00024. HOMEOBOX.
    PR00031. HTHREPRESSR.
    SMARTi SM00389. HOX. 1 hit.
    [Graphical view ]
    SUPFAMi SSF46689. SSF46689. 1 hit.
    PROSITEi PS00027. HOMEOBOX_1. 1 hit.
    PS50071. HOMEOBOX_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Expression of carp-cdx1, a caudal homolog, in embryos of the carp, Cyprinus carpio."
      Stroband H.W.J., Stevens C., te Kronnie G., Samallo J., Schipper H., Kramer B., Timmermans L.P.M.
      Roux's Arch. Dev. Biol. 204:369-377(1995)
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: Whole embryoImported.

    Entry informationi

    Entry nameiQ90320_CYPCA
    AccessioniPrimary (citable) accession number: Q90320
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 1, 1996
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 80 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)