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Q90320

- Q90320_CYPCA

UniProt

Q90320 - Q90320_CYPCA

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Protein
Submitted name: Cdx1 protein
Gene
cdx1
Organism
Cyprinus carpio (Common carp)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. sequence-specific DNA binding transcription factor activity Source: InterPro
  2. transcription regulatory region sequence-specific DNA binding Source: InterPro

GO - Biological processi

  1. multicellular organismal development Source: InterPro
Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotations

Names & Taxonomyi

Protein namesi
Submitted name:
Cdx1 proteinImported
Gene namesi
Name:cdx1Imported
OrganismiCyprinus carpio (Common carp)Imported
Taxonomic identifieri7962 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeCyprinus

Subcellular locationi

Nucleus By similarity UniRule annotationSAAS annotations

GO - Cellular componenti

  1. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotations

Structurei

3D structure databases

ProteinModelPortaliQ90320.
SMRiQ90320. Positions 151-213.

Family & Domainsi

Sequence similaritiesi

Contains homeobox DNA-binding domain.SAAS annotations

Keywords - Domaini

HomeoboxUniRule annotationSAAS annotations

Phylogenomic databases

HOVERGENiHBG005302.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR006820. Caudal_activation_dom.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
IPR000047. HTH_motif.
[Graphical view]
PfamiPF04731. Caudal_act. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
PR00031. HTHREPRESSR.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q90320-1 [UniParc]FASTAAdd to Basket

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MYVGYLLDKE GSMYHQGSVR RSGISLPPQN FVSTPQYSDF TGYHHVPNMD    50
THAQSAGAWG PPYGAPREDW GAYSLGPPNT ISAPMSSSSP GQVSYCSSDY 100
NAMHGPGSAV LPPPPENISV GQLSPERERR NSYQWMSKTV QSSSTGKTRT 150
KEKYRVVYTD HQRLELEKEF HFNRYITIRR KSELAVNLGL SERQVKIWFQ 200
NRRAKERKLI KKKLGVSDGS GGSVHSDPGS VSPLPVPGVT ESVRHTRFSV 250
PTPRNERLTI YEEHTASYCH SVNSNLKDPT LTEHSNTLKG QNRSGPLAWT 300
KRITNYYTTG IKARVVDYHR RITS 324
Length:324
Mass (Da):36,387
Last modified:November 1, 1996 - v1
Checksum:i0E092B545E1D9538
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X80668 mRNA. Translation: CAA56695.1.
PIRiI50125.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X80668 mRNA. Translation: CAA56695.1 .
PIRi I50125.

3D structure databases

ProteinModelPortali Q90320.
SMRi Q90320. Positions 151-213.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Phylogenomic databases

HOVERGENi HBG005302.

Family and domain databases

Gene3Di 1.10.10.60. 1 hit.
InterProi IPR006820. Caudal_activation_dom.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
IPR000047. HTH_motif.
[Graphical view ]
Pfami PF04731. Caudal_act. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view ]
PRINTSi PR00024. HOMEOBOX.
PR00031. HTHREPRESSR.
SMARTi SM00389. HOX. 1 hit.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Expression of carp-cdx1, a caudal homolog, in embryos of the carp, Cyprinus carpio."
    Stroband H.W.J., Stevens C., te Kronnie G., Samallo J., Schipper H., Kramer B., Timmermans L.P.M.
    Roux's Arch. Dev. Biol. 204:369-377(1995)
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Whole embryoImported.

Entry informationi

Entry nameiQ90320_CYPCA
AccessioniPrimary (citable) accession number: Q90320
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: October 16, 2013
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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