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Protein
Submitted name:

Zf-cad1 protein

Gene

cdx4

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • chromatin binding Source: ZFIN
  • DNA binding Source: ZFIN
  • sequence-specific DNA binding Source: InterPro

GO - Biological processi

  • anterior/posterior axis specification Source: ZFIN
  • anterior/posterior pattern specification Source: ZFIN
  • embryonic foregut morphogenesis Source: ZFIN
  • hemopoiesis Source: ZFIN
  • hindbrain-spinal cord boundary formation Source: ZFIN
  • pancreas development Source: ZFIN
  • pronephros development Source: ZFIN
  • regulation of transcription, DNA-templated Source: InterPro
  • retinoic acid receptor signaling pathway Source: ZFIN
  • rostrocaudal neural tube patterning Source: ZFIN
  • somitogenesis Source: ZFIN
Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Zf-cad1 proteinImported
Gene namesi
Name:cdx4Imported
Synonyms:cad1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-980526-330. cdx4.

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiQ90262.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000052708.

Structurei

3D structure databases

ProteinModelPortaliQ90262.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini149 – 209Homeobox DNA-bindingInterPro annotationAdd BLAST61

Keywords - Domaini

HomeoboxUniRule annotationSAAS annotationImported

Phylogenomic databases

eggNOGiKOG0848. Eukaryota.
ENOG4111W2J. LUCA.
HOGENOMiHOG000115975.
HOVERGENiHBG005302.
PhylomeDBiQ90262.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR006820. Caudal_activation_dom.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
IPR000047. HTH_motif.
[Graphical view]
PfamiPF04731. Caudal_act. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
PR00031. HTHREPRESSR.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q90262-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYVGYLLEKE ASMYHQGAVR RSGISLPPQN FVSTPQYSDF TGYHHVPNME
60 70 80 90 100
THAQSAGAWG APYGAPREDW GAYSLGPPNS ISAPMSNSSP GPVSYCSPDY
110 120 130 140 150
NTMHGPGSAV LPPPPENIPV AQLSPERERR NSYQWMSKTV QSSSTGKTRT
160 170 180 190 200
KEKYRVVYTD HQRLELEKEF HFNRYITIRR KSELAVNLGL SERQVKIWFQ
210 220 230 240 250
NRRAKERKLI KKKLGQSDGS GGSVHSDPGS VSPLPVRVTE SFRYTRFSVS
260 270 280 290 300
STNERLAVHE EHTASYCHSV NSNLDHPTLT EHSNTLKGQN QTWSKRITNY
Length:300
Mass (Da):33,816
Last modified:November 1, 1996 - v1
Checksum:iC04604CE8A3B1708
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66958 mRNA. Translation: CAA47380.1.
PIRiS25706.
UniGeneiDr.11836.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66958 mRNA. Translation: CAA47380.1.
PIRiS25706.
UniGeneiDr.11836.

3D structure databases

ProteinModelPortaliQ90262.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000052708.

Proteomic databases

PaxDbiQ90262.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

ZFINiZDB-GENE-980526-330. cdx4.

Phylogenomic databases

eggNOGiKOG0848. Eukaryota.
ENOG4111W2J. LUCA.
HOGENOMiHOG000115975.
HOVERGENiHBG005302.
PhylomeDBiQ90262.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR006820. Caudal_activation_dom.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
IPR000047. HTH_motif.
[Graphical view]
PfamiPF04731. Caudal_act. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
PR00031. HTHREPRESSR.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ90262_DANRE
AccessioniPrimary (citable) accession number: Q90262
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 123 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.