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Protein
Submitted name:

Zf-cad1 protein

Gene

cdx4

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi151 – 210HomeoboxPROSITE-ProRule annotationAdd BLAST60

GO - Molecular functioni

  • chromatin binding Source: ZFIN
  • DNA binding Source: ZFIN
  • sequence-specific DNA binding Source: InterPro

GO - Biological processi

  • anterior/posterior axis specification Source: ZFIN
  • anterior/posterior pattern specification Source: ZFIN
  • embryonic foregut morphogenesis Source: ZFIN
  • hemopoiesis Source: ZFIN
  • hindbrain-spinal cord boundary formation Source: ZFIN
  • pancreas development Source: ZFIN
  • post-anal tail morphogenesis Source: ZFIN
  • pronephros development Source: ZFIN
  • regulation of transcription, DNA-templated Source: InterPro
  • retinoic acid receptor signaling pathway Source: ZFIN
  • rostrocaudal neural tube patterning Source: ZFIN
  • somitogenesis Source: ZFIN

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Zf-cad1 proteinImported
Gene namesi
Name:cdx4Imported
Synonyms:cad1Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-980526-330. cdx4.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiQ90262.

Structurei

3D structure databases

ProteinModelPortaliQ90262.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini149 – 209HomeoboxInterPro annotationAdd BLAST61

Keywords - Domaini

HomeoboxPROSITE-ProRule annotationSAAS annotationImported

Phylogenomic databases

eggNOGiKOG0848. Eukaryota.
ENOG4111W2J. LUCA.
HOGENOMiHOG000115975.
HOVERGENiHBG005302.
PhylomeDBiQ90262.

Family and domain databases

CDDicd00086. homeodomain. 1 hit.
InterProiView protein in InterPro
IPR006820. Caudal_activation_dom.
IPR009057. Homeobox-like_sf.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR000047. HTH_motif.
PfamiView protein in Pfam
PF04731. Caudal_act. 1 hit.
PF00046. Homeobox. 1 hit.
PRINTSiPR00024. HOMEOBOX.
PR00031. HTHREPRESSR.
SMARTiView protein in SMART
SM00389. HOX. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiView protein in PROSITE
PS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q90262-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYVGYLLEKE ASMYHQGAVR RSGISLPPQN FVSTPQYSDF TGYHHVPNME
60 70 80 90 100
THAQSAGAWG APYGAPREDW GAYSLGPPNS ISAPMSNSSP GPVSYCSPDY
110 120 130 140 150
NTMHGPGSAV LPPPPENIPV AQLSPERERR NSYQWMSKTV QSSSTGKTRT
160 170 180 190 200
KEKYRVVYTD HQRLELEKEF HFNRYITIRR KSELAVNLGL SERQVKIWFQ
210 220 230 240 250
NRRAKERKLI KKKLGQSDGS GGSVHSDPGS VSPLPVRVTE SFRYTRFSVS
260 270 280 290 300
STNERLAVHE EHTASYCHSV NSNLDHPTLT EHSNTLKGQN QTWSKRITNY
Length:300
Mass (Da):33,816
Last modified:November 1, 1996 - v1
Checksum:iC04604CE8A3B1708
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X66958 mRNA. Translation: CAA47380.1.
PIRiS25706.
UniGeneiDr.11836.

Similar proteinsi

Entry informationi

Entry nameiQ90262_DANRE
AccessioniPrimary (citable) accession number: Q90262
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 22, 2017
This is version 130 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)