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Protein
Submitted name:

Putative transcriptional repressor (TetR/AcrR family)

Gene

ybiH

Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi33 – 52H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Putative transcriptional repressor (TetR/AcrR family)Imported
Gene namesi
Name:ybiHImported
Ordered Locus Names:STM0819Imported
OrganismiSalmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)Imported
Taxonomic identifieri99287 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000001014 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PaxDbiQ8ZQN9.
PRIDEiQ8ZQN9.

Interactioni

Protein-protein interaction databases

STRINGi99287.STM0819.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1T33X-ray2.20A/B1-224[»]
ProteinModelPortaliQ8ZQN9.
SMRiQ8ZQN9.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8ZQN9.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 70HTH tetR-typeInterPro annotationAdd BLAST60

Phylogenomic databases

eggNOGiENOG4107MVR. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000118101.
OMAiYFRIGRE.
PhylomeDBiQ8ZQN9.

Family and domain databases

InterProiView protein in InterPro
IPR023772. DNA-bd_HTH_TetR-type_CS.
IPR009057. Homeobox-like.
IPR001647. HTH_TetR.
IPR011075. Tet_transcr_reg_TetR-rel_C.
IPR015292. Tscrpt_reg_YbiH_C.
PfamiView protein in Pfam
PF09209. DUF1956. 1 hit.
PF00440. TetR_N. 1 hit.
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiView protein in PROSITE
PS01081. HTH_TETR_1. 1 hit.
PS50977. HTH_TETR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8ZQN9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIPTTTTKG EQAKSQLIAA ALAQFGEYGL HATTRDIAAL AGQNIAAITY
60 70 80 90 100
YFGSKEDLYL ACAQWIADFL GEKFRPHAEK AERLFSQPAP DRDAIRELIL
110 120 130 140 150
LACKNMIMLL TQEDTVNLSK FISREQLSPT SAYQLVHEQV IDPLHTHLTR
160 170 180 190 200
LVAAYTGCDA NDTRMILHTH ALLGEVLAFR LGKETILLRT GWPQFDEEKA
210 220
ELIYQTVTCH IDLILHGLTQ RSLD
Length:224
Mass (Da):25,095
Last modified:March 1, 2002 - v1
Checksum:iF4C71A069D213F45
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006468 Genomic DNA. Translation: AAL19756.1.
RefSeqiNP_459797.1. NC_003197.2.
WP_001025254.1. NC_003197.2.

Genome annotation databases

EnsemblBacteriaiAAL19756; AAL19756; STM0819.
GeneIDi1252339.
KEGGistm:STM0819.
PATRICifig|99287.12.peg.853.

Similar proteinsi

Entry informationi

Entry nameiQ8ZQN9_SALTY
AccessioniPrimary (citable) accession number: Q8ZQN9
Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: September 27, 2017
This is version 108 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported