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Protein
Submitted name:

Putative transcriptional repressor (TetR/AcrR family)

Gene

ybiH

Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciSENT99287:GCTI-824-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative transcriptional repressor (TetR/AcrR family)Imported
Gene namesi
Name:ybiHImported
Ordered Locus Names:STM0819Imported
OrganismiSalmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)Imported
Taxonomic identifieri99287 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000001014 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PaxDbiQ8ZQN9.
PRIDEiQ8ZQN9.

Interactioni

Protein-protein interaction databases

STRINGi99287.STM0819.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1T33X-ray2.20A/B1-224[»]
ProteinModelPortaliQ8ZQN9.
SMRiQ8ZQN9. Positions 1-220.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8ZQN9.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini11 – 7060HTH tetR-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH tetR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG4107MVR. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000118101.
OMAiSPTDAYP.
OrthoDBiEOG6W19GK.
PhylomeDBiQ8ZQN9.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR023772. DNA-bd_HTH_TetR-type_CS.
IPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
IPR015292. Tscrpt_reg_YbiH_C.
[Graphical view]
PfamiPF09209. DUF1956. 1 hit.
PF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS01081. HTH_TETR_1. 1 hit.
PS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8ZQN9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIPTTTTKG EQAKSQLIAA ALAQFGEYGL HATTRDIAAL AGQNIAAITY
60 70 80 90 100
YFGSKEDLYL ACAQWIADFL GEKFRPHAEK AERLFSQPAP DRDAIRELIL
110 120 130 140 150
LACKNMIMLL TQEDTVNLSK FISREQLSPT SAYQLVHEQV IDPLHTHLTR
160 170 180 190 200
LVAAYTGCDA NDTRMILHTH ALLGEVLAFR LGKETILLRT GWPQFDEEKA
210 220
ELIYQTVTCH IDLILHGLTQ RSLD
Length:224
Mass (Da):25,095
Last modified:March 1, 2002 - v1
Checksum:iF4C71A069D213F45
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006468 Genomic DNA. Translation: AAL19756.1.
RefSeqiNP_459797.1. NC_003197.1.
WP_001025254.1. NC_003197.1.

Genome annotation databases

EnsemblBacteriaiAAL19756; AAL19756; STM0819.
GeneIDi1252339.
KEGGistm:STM0819.
PATRICi32380011. VBISalEnt20916_0853.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006468 Genomic DNA. Translation: AAL19756.1.
RefSeqiNP_459797.1. NC_003197.1.
WP_001025254.1. NC_003197.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1T33X-ray2.20A/B1-224[»]
ProteinModelPortaliQ8ZQN9.
SMRiQ8ZQN9. Positions 1-220.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi99287.STM0819.

Proteomic databases

PaxDbiQ8ZQN9.
PRIDEiQ8ZQN9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL19756; AAL19756; STM0819.
GeneIDi1252339.
KEGGistm:STM0819.
PATRICi32380011. VBISalEnt20916_0853.

Phylogenomic databases

eggNOGiENOG4107MVR. Bacteria.
COG1309. LUCA.
HOGENOMiHOG000118101.
OMAiSPTDAYP.
OrthoDBiEOG6W19GK.
PhylomeDBiQ8ZQN9.

Enzyme and pathway databases

BioCyciSENT99287:GCTI-824-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ8ZQN9.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
1.10.357.10. 1 hit.
InterProiIPR023772. DNA-bd_HTH_TetR-type_CS.
IPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
IPR015292. Tscrpt_reg_YbiH_C.
[Graphical view]
PfamiPF09209. DUF1956. 1 hit.
PF00440. TetR_N. 1 hit.
[Graphical view]
PRINTSiPR00455. HTHTETR.
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS01081. HTH_TETR_1. 1 hit.
PS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LT2 / SGSC1412 / ATCC 700720Imported.
  2. "The crystal structure of a putative transcriptional repressor (TetR/AcrR family) from Salmonella typhimurium."
    Zhang R., Zhou M., Collart F., Joachimiak A.
    Submitted (APR-2004) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS).

Entry informationi

Entry nameiQ8ZQN9_SALTY
AccessioniPrimary (citable) accession number: Q8ZQN9
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: March 16, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.