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Protein
Submitted name:

Putative periplasmic protein

Gene

ydgH

Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciSENT99287:GCTI-1488-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative periplasmic proteinImported
Gene namesi
Name:ydgHImported
Ordered Locus Names:STM1478Imported
OrganismiSalmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)Imported
Taxonomic identifieri99287 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000001014 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 314292Sequence analysisPRO_5004320594Add
BLAST

Proteomic databases

PaxDbiQ8ZPL1.
PRIDEiQ8ZPL1.

Interactioni

Protein-protein interaction databases

STRINGi99287.STM1478.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2M2JNMR-A21-91[»]
4EVUX-ray1.45A/B244-314[»]
ProteinModelPortaliQ8ZPL1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini34 – 9057DUF1471InterPro annotationAdd
BLAST
Domaini118 – 17457DUF1471InterPro annotationAdd
BLAST
Domaini259 – 31456DUF1471InterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105C5D. Bacteria.
ENOG410XNQU. LUCA.
HOGENOMiHOG000120852.
OMAiFYIVRQV.
OrthoDBiEOG6W9X6P.

Family and domain databases

Gene3Di3.30.1660.10. 3 hits.
InterProiIPR025543. Dodecin-like.
IPR010854. DUF1471.
IPR025539. YdgH.
[Graphical view]
PfamiPF07338. DUF1471. 3 hits.
[Graphical view]
PIRSFiPIRSF014774. YdgH. 1 hit.
SUPFAMiSSF159871. SSF159871. 3 hits.

Sequencei

Sequence statusi: Complete.

Q8ZPL1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLKNTLLAS ALLSAAAFSV HAATELTPEQ AAALKPYDRI VITGRFNAIG
60 70 80 90 100
DAVSAVSRRA DKEGAASFYV VDTSEFGNSG NWRVVADVYK ADAPKADAPK
110 120 130 140 150
NRVINGIVEL PKDQAVQLEP YDTVTVQGFY RSQPEVNDAI TKAAKQKGAY
160 170 180 190 200
AFYIVRQIDA NQGGNQRITA FIYKQDAKKR IVQSPDAIPA DSEAGRAALA
210 220 230 240 250
QGGEAAKKVE IPGVATSASP SAEVGRFFET QSSKGGRYTV TLPDGTKVEE
260 270 280 290 300
LNKATAAMMV PFDSVKFTGN YGNMTEISYQ VAKRAAKKGA KYYHITRQWQ
310
ERGNNITISA DLYK
Length:314
Mass (Da):33,915
Last modified:March 1, 2002 - v1
Checksum:i5CA9740A2D669D10
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006468 Genomic DNA. Translation: AAL20397.1.
RefSeqiNP_460438.1. NC_003197.1.
WP_000769294.1. NC_003197.1.

Genome annotation databases

EnsemblBacteriaiAAL20397; AAL20397; STM1478.
GeneIDi1252996.
KEGGistm:STM1478.
PATRICi32381441. VBISalEnt20916_1561.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE006468 Genomic DNA. Translation: AAL20397.1.
RefSeqiNP_460438.1. NC_003197.1.
WP_000769294.1. NC_003197.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2M2JNMR-A21-91[»]
4EVUX-ray1.45A/B244-314[»]
ProteinModelPortaliQ8ZPL1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi99287.STM1478.

Proteomic databases

PaxDbiQ8ZPL1.
PRIDEiQ8ZPL1.

Protocols and materials databases

DNASUi1252996.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL20397; AAL20397; STM1478.
GeneIDi1252996.
KEGGistm:STM1478.
PATRICi32381441. VBISalEnt20916_1561.

Phylogenomic databases

eggNOGiENOG4105C5D. Bacteria.
ENOG410XNQU. LUCA.
HOGENOMiHOG000120852.
OMAiFYIVRQV.
OrthoDBiEOG6W9X6P.

Enzyme and pathway databases

BioCyciSENT99287:GCTI-1488-MONOMER.

Family and domain databases

Gene3Di3.30.1660.10. 3 hits.
InterProiIPR025543. Dodecin-like.
IPR010854. DUF1471.
IPR025539. YdgH.
[Graphical view]
PfamiPF07338. DUF1471. 3 hits.
[Graphical view]
PIRSFiPIRSF014774. YdgH. 1 hit.
SUPFAMiSSF159871. SSF159871. 3 hits.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: LT2 / SGSC1412 / ATCC 700720Imported.
  2. Cited for: X-RAY CRYSTALLOGRAPHY (1.45 ANGSTROMS) OF 244-314.

Entry informationi

Entry nameiQ8ZPL1_SALTY
AccessioniPrimary (citable) accession number: Q8ZPL1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: February 17, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.