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Protein
Submitted name:

Copper-zinc superoxide dismutase

Gene

sodC

Organism
Salmonella typhi
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Cu cationUniRule annotationNote: Binds 1 copper ion per subunit.UniRule annotation
  • Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Copper-zinc superoxide dismutaseImported
Submitted name:
SodCImported
Gene namesi
Name:sodCImported
Ordered Locus Names:STY1682Imported, t1308Imported
OrganismiSalmonella typhiImported
Taxonomic identifieri90370 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
ProteomesiUP000002670 Componenti: Chromosome UP000000541 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi220341.STY1682.

Structurei

3D structure databases

ProteinModelPortaliQ8Z6P6.
SMRiQ8Z6P6. Positions 20-173.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000263449.
KOiK04565.
OMAiGARYACG.
OrthoDBiEOG6K13RS.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8Z6P6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRLSLAMVT LLACAGAQAA SEKVEMNLVT AQGVGQSIGT VVIDETEGGL
60 70 80 90 100
KFTPHLKALP PGEHGFHIHA KGSCQPAIKD GKAVAAEAAG GHLDPQNTGK
110 120 130 140 150
HEGPEGQGHL GDLPVLVVNN DGIATEPVTA PRLKSLDEVK DKALMIHVGG
160 170
DNMSDQPKPL GGGGTRYACG VIK
Length:173
Mass (Da):17,735
Last modified:February 28, 2002 - v1
Checksum:i00A5A8B6AF25B4EF
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei173 – 1731Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014613 Genomic DNA. Translation: AAO68958.1.
EU181430 Genomic DNA. Translation: ABW24660.1.
AL513382 Genomic DNA. Translation: CAD01927.1.
RefSeqiNP_456090.1. NC_003198.1.
NP_805109.1. NC_004631.1.

Genome annotation databases

EnsemblBacteriaiAAO68958; AAO68958; t1308.
CAD01927; CAD01927; CAD01927.
GeneIDi1248056.
KEGGisty:STY1682.
PATRICi18541256. VBISalEnt120419_1692.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE014613 Genomic DNA. Translation: AAO68958.1.
EU181430 Genomic DNA. Translation: ABW24660.1.
AL513382 Genomic DNA. Translation: CAD01927.1.
RefSeqiNP_456090.1. NC_003198.1.
NP_805109.1. NC_004631.1.

3D structure databases

ProteinModelPortaliQ8Z6P6.
SMRiQ8Z6P6. Positions 20-173.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi220341.STY1682.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO68958; AAO68958; t1308.
CAD01927; CAD01927; CAD01927.
GeneIDi1248056.
KEGGisty:STY1682.
PATRICi18541256. VBISalEnt120419_1692.

Phylogenomic databases

HOGENOMiHOG000263449.
KOiK04565.
OMAiGARYACG.
OrthoDBiEOG6K13RS.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CT18Imported.
  2. "Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18."
    Deng W., Liou S.-R., Plunkett G. III, Mayhew G.F., Rose D.J., Burland V., Kodoyianni V., Schwartz D.C., Blattner F.R.
    J. Bacteriol. 185:2330-2337(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700931 / Ty2Imported and Ty2Imported.
  3. "Cloning and sequencing of sodC gene from Salmonella typhi."
    Kasetty S.M., Shivannavar C.T.
    Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ8Z6P6_SALTI
AccessioniPrimary (citable) accession number: Q8Z6P6
Secondary accession number(s): Q7CA25
Entry historyi
Integrated into UniProtKB/TrEMBL: February 28, 2002
Last sequence update: February 28, 2002
Last modified: March 31, 2015
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.