Skip Header

Contribute Send feedback
Read comments (?) or add your own

Q8YW98 (DNLJ_NOSS1) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
DNA ligase
EC=6.5.1.2
Alternative name(s):
Polydeoxyribonucleotide synthase [NAD+]
Gene names
Name:ligA
Ordered Locus Names:all1717
OrganismNostoc sp. (strain PCC 7120 / UTEX 2576) [Complete proteome] [HAMAP]
Taxonomic identifier103690 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Nostocales › Nostocaceae › Nostoc

Protein attributes

Sequence length677 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA By similarity. HAMAP MF_01588

Catalytic activity

NAD+ + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + nicotinamide nucleotide + (deoxyribonucleotide)(n+m). HAMAP MF_01588

Cofactor

Magnesium or manganese By similarity. HAMAP MF_01588

Sequence similarities

Belongs to the NAD-dependent DNA ligase family. LigA subfamily.

Contains 1 BRCT domain.

Ontologies

Keywords
   Biological processDNA damage
DNA repair
DNA replication
   LigandMagnesium
Manganese
Metal-binding
NAD
Zinc
   Molecular functionLigase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processDNA repair

Inferred from electronic annotation. Source: UniProtKB-KW

DNA replication

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular componentintracellular

Inferred from electronic annotation. Source: InterPro

   Molecular functionDNA binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (NAD+) activity

Inferred from electronic annotation. Source: EC

metal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 677677DNA ligase HAMAP MF_01588
PRO_0000313109

Regions

Domain599 – 67779BRCT
Nucleotide binding35 – 395NAD By similarity
Nucleotide binding84 – 852NAD By similarity

Sites

Active site1171N6-AMP-lysine intermediate By similarity
Metal binding4141Zinc By similarity
Metal binding4171Zinc By similarity
Metal binding4321Zinc By similarity
Metal binding4371Zinc By similarity
Binding site1151NAD By similarity
Binding site1381NAD By similarity
Binding site1771NAD By similarity
Binding site2961NAD By similarity
Binding site3201NAD By similarity

Sequences

Sequence LengthMass (Da)Tools
Q8YW98 [UniParc].

Last modified March 1, 2002. Version 1.
Checksum: 282051173962C496

FASTA67775,792
        10         20         30         40         50         60 
MIQTHSEVKR VEELRRLLQQ ASYAYYVSDA PIMEDAVYDQ LYRELQQLEI QHPELVTPDS 

        70         80         90        100        110        120 
PTQRIGERPA TQFLSVRHNI PLYSLENAFN VEELQAWDQR WRRQVAPTEA EYVAELKIDG 

       130        140        150        160        170        180 
SAIALTYQNG ILVRGATRGD GVTGEDITQN VRTIRSIPLR LNFDGIEKVE KVEVRGEAFL 

       190        200        210        220        230        240 
PLEVFKQINE ERQKAGEQLF ANPRNAAAGT LRQLDSRIVA RRRLDFFAYT LHISGMDDAS 

       250        260        270        280        290        300 
IANTQWEALE LLQKMGFRVN PNHKLCQSLA EVADYYKYWD TERLNLPYMT DGVVLKLNSF 

       310        320        330        340        350        360 
KLQEQLGFTQ RFPRWAVALK YPAEEAPTRV ENIAVNVGRT GALTPLAQMR PVQLAGTTVS 

       370        380        390        400        410        420 
RATLHNSDRI AQLDIRIGDT VIVRKAGEII PEVVRVIKEL RPADTQPFIM PTHCPVCGQP 

       430        440        450        460        470        480 
VVRETGEAVT RCVNASCPAI LKGSIEHWVS RDALDIKGVG EKLVYQLVDK GLVHSVADLY 

       490        500        510        520        530        540 
DLTTERLFAL ERMGEKSAQK LIEAIAQSKN QPWSRVLYGL GIRHVGSVNA QLLSEKYRAV 

       550        560        570        580        590        600 
AELSSAKQSD IEGIYGIGAE IAQSVYQWFR INANQSLIER LQAAGLKLAN TEEIPVMNNG 

       610        620        630        640        650        660 
ILKLNGKTFV VTGTLPTLKR DEVKALIQKA GGKVTDSVSK KTDYLVVGED AGSKLEKAQA 

       670 
LGIAQLTETQ LLEILEE

« Hide

References

[1]"Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120."
Kaneko T., Nakamura Y., Wolk C.P., Kuritz T., Sasamoto S., Watanabe A., Iriguchi M., Ishikawa A., Kawashima K., Kimura T., Kishida Y., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakazaki N., Shimpo S., Sugimoto M. expand/collapse author list , Takazawa M., Yamada M., Yasuda M., Tabata S.
DNA Res. 8:205-213(2001) [PubMed: 11759840] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PCC 7120 / UTEX 2576.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BA000019 Genomic DNA. Translation: BAB78083.1.
PIRAG2020.
RefSeqNP_485757.1. NC_003272.1.

3D structure databases

HSSPHSSP built from PDB template 1L7B based on UniProtKB P26996.
ProteinModelPortalQ8YW98.
SMRQ8YW98. Positions 7-322, 597-676.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ8YW98.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1105309.
GenomeReviewsGene locus all1717 in contig BA000019_GR.
KEGGana:all1717.
NMPDRfig|103690.1.peg.2024.
PATRIC22773484. VBINosSp37423_2220.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0272.
HOGENOMHBG620317.
OMAENVRTIR.
PhylomeDBQ8YW98.
ProtClustDBPRK07956.

Enzyme and pathway databases

BioCycNSP103690:ALL1717-MONOMER.

Family and domain databases

HAMAPMF_01588. DNA_ligase_A.
[Tree]
InterProIPR001357. BRCT.
IPR018239. DNA_ligase_AS.
IPR004150. DNA_ligase_OB.
IPR001679. DNAligase.
IPR013839. DNAligase_adenylation.
IPR013840. DNAligase_N.
IPR003583. Hlx-hairpin-Hlx_DNA-bd_motif.
IPR012340. NA-bd_OB-fold.
IPR016027. NA-bd_OB-fold-like.
IPR010994. RuvA_2-like.
IPR004149. Znf_DNAligase_C4.
[Graphical view]
Gene3DG3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KOK01972.
PfamPF00533. BRCT. 1 hit.
PF01653. DNA_ligase_aden. 1 hit.
PF03120. DNA_ligase_OB. 1 hit.
PF03119. DNA_ligase_ZBD. 1 hit.
[Graphical view]
PIRSFPIRSF001604. LigA. 1 hit.
SMARTSM00292. BRCT. 1 hit.
SM00278. HhH1. 3 hits.
SM00532. LIGANc. 1 hit.
[Graphical view]
SUPFAMSSF52113. BRCT. 1 hit.
SSF50249. Nucleic_acid_OB. 1 hit.
SSF47781. RuvA_2_like. 1 hit.
TIGRFAMsTIGR00575. Dnlj. 1 hit.
PROSITEPS50172. BRCT. 1 hit.
PS01055. DNA_LIGASE_N1. 1 hit.
PS01056. DNA_LIGASE_N2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameDNLJ_NOSS1
AccessionPrimary (citable) accession number: Q8YW98
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: March 1, 2002
Last modified: January 25, 2012
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents