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Protein
Submitted name:

Bacteriorhodopsin

Gene

alr3165

Organism
Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Protein family/group databases

TCDBi3.E.1.1.6. the ion-translocating microbial rhodopsin (mr) family.

Names & Taxonomyi

Protein namesi
Submitted name:
BacteriorhodopsinImported
Gene namesi
Ordered Locus Names:alr3165Imported
OrganismiNostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)Imported
Taxonomic identifieri103690 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaNostocalesNostocaceaeNostoc
Proteomesi
  • UP000002483 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei6 – 25HelicalSequence analysisAdd BLAST20
Transmembranei37 – 56HelicalSequence analysisAdd BLAST20
Transmembranei76 – 92HelicalSequence analysisAdd BLAST17
Transmembranei99 – 117HelicalSequence analysisAdd BLAST19
Transmembranei129 – 147HelicalSequence analysisAdd BLAST19
Transmembranei168 – 193HelicalSequence analysisAdd BLAST26
Transmembranei199 – 218HelicalSequence analysisAdd BLAST20

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Chemistry databases

DrugBankiDB04327. Phosphatidylethanolamine.

Interactioni

Protein-protein interaction databases

STRINGi103690.alr3165.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1XIOX-ray2.00A1-261[»]
2M3GNMR-A/B/C1-229[»]
4TL3X-ray2.30A/B1-226[»]
ProteinModelPortaliQ8YSC4.
SMRiQ8YSC4.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8YSC4.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG41061VM. Bacteria.
COG5524. LUCA.
HOGENOMiHOG000080951.
KOiK04641.
OMAiRIFHYIT.
OrthoDBiPOG091H0QF2.

Family and domain databases

InterProiView protein in InterPro
IPR001425. Arc/bac/fun_rhodopsins.
IPR018229. Rhodopsin_retinal_BS.
PANTHERiPTHR28286. PTHR28286. 1 hit.
PfamiView protein in Pfam
PF01036. Bac_rhodopsin. 1 hit.
PRINTSiPR00251. BACTRLOPSIN.
SMARTiView protein in SMART
SM01021. Bac_rhodopsin. 1 hit.
PROSITEiView protein in PROSITE
PS00950. BACTERIAL_OPSIN_1. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8YSC4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNLESLLHWI YVAGMTIGAL HFWSLSRNPR GVPQYEYLVA MFIPIWSGLA
60 70 80 90 100
YMAMAIDQGK VEAAGQIAHY ARYIDWMVTT PLLLLSLSWT AMQFIKKDWT
110 120 130 140 150
LIGFLMSTQI VVITSGLIAD LSERDWVRYL WYICGVCAFL IILWGIWNPL
160 170 180 190 200
RAKTRTQSSE LANLYDKLVT YFTVLWIGYP IVWIIGPSGF GWINQTIDTF
210 220 230 240 250
LFCLLPFFSK VGFSFLDLHG LRNLNDSRQT TGDRFAENTL QFVENITLFA
260
NSRRQQSRRR V
Length:261
Mass (Da):30,191
Last modified:March 1, 2002 - v1
Checksum:i0791240FEDE9B148
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000019 Genomic DNA. Translation: BAB74864.1.
PIRiAF2201.
RefSeqiWP_010997316.1. NC_003272.1.

Genome annotation databases

EnsemblBacteriaiBAB74864; BAB74864; BAB74864.
KEGGiana:alr3165.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000019 Genomic DNA. Translation: BAB74864.1.
PIRiAF2201.
RefSeqiWP_010997316.1. NC_003272.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1XIOX-ray2.00A1-261[»]
2M3GNMR-A/B/C1-229[»]
4TL3X-ray2.30A/B1-226[»]
ProteinModelPortaliQ8YSC4.
SMRiQ8YSC4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi103690.alr3165.

Chemistry databases

DrugBankiDB04327. Phosphatidylethanolamine.

Protein family/group databases

TCDBi3.E.1.1.6. the ion-translocating microbial rhodopsin (mr) family.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB74864; BAB74864; BAB74864.
KEGGiana:alr3165.

Phylogenomic databases

eggNOGiENOG41061VM. Bacteria.
COG5524. LUCA.
HOGENOMiHOG000080951.
KOiK04641.
OMAiRIFHYIT.
OrthoDBiPOG091H0QF2.

Miscellaneous databases

EvolutionaryTraceiQ8YSC4.

Family and domain databases

InterProiView protein in InterPro
IPR001425. Arc/bac/fun_rhodopsins.
IPR018229. Rhodopsin_retinal_BS.
PANTHERiPTHR28286. PTHR28286. 1 hit.
PfamiView protein in Pfam
PF01036. Bac_rhodopsin. 1 hit.
PRINTSiPR00251. BACTRLOPSIN.
SMARTiView protein in SMART
SM01021. Bac_rhodopsin. 1 hit.
PROSITEiView protein in PROSITE
PS00950. BACTERIAL_OPSIN_1. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ8YSC4_NOSS1
AccessioniPrimary (citable) accession number: Q8YSC4
Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: June 7, 2017
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.