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Protein

50S ribosomal protein L25

Gene

rplY

Organism
Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotation

GO - Molecular functioni

  1. 5S rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L25UniRule annotation
Alternative name(s):
General stress protein CTCUniRule annotation
Gene namesi
Name:rplYUniRule annotation
Synonyms:ctcUniRule annotation
Ordered Locus Names:BMEI0481
OrganismiBrucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Taxonomic identifieri224914 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000000419 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 20720750S ribosomal protein L25PRO_0000181525Add
BLAST

Proteomic databases

PRIDEiQ8YIG3.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotation

Protein-protein interaction databases

STRINGi224914.BMEI0481.

Structurei

3D structure databases

ProteinModelPortaliQ8YIG3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L25P family. CTC subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000214907.
KOiK02897.
OMAiYGGDKAP.
OrthoDBiEOG6SZ1PC.

Family and domain databases

Gene3Di2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPiMF_01334. Ribosomal_L25_CTC.
InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
[Graphical view]
PfamiPF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view]
ProDomiPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50715. SSF50715. 1 hit.
TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8YIG3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSETYVLKAD LRTRVGKGSS RELRRNGQIP AVIYGDKQEP LAIAVSYKEI
60 70 80 90 100
FYKIHGGGFK TTVATIEVDG KKIQVLPKDY QLDPVRDFPQ HVDFLRVSAK
110 120 130 140 150
SVVHVNVPVH FKNEEAAPGI KRGGVLNVVR HDVELIVPAN AIPEALEIDL
160 170 180 190 200
SGLEIGDSVH ISAVKLPKGA TPAIQDRDFT IATIAAPAGL KSEENAEGAA

EEAKDGE
Length:207
Mass (Da):22,383
Last modified:June 20, 2005 - v2
Checksum:i24DD3507AD4C5492
GO

Sequence cautioni

The sequence AAL51662.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008917 Genomic DNA. Translation: AAL51662.1. Different initiation.
PIRiAC3312.
RefSeqiNP_539398.2. NC_003317.1.

Genome annotation databases

EnsemblBacteriaiAAL51662; AAL51662; BMEI0481.
KEGGibme:BMEI0481.
PATRICi17851060. VBIBruMel92729_0540.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008917 Genomic DNA. Translation: AAL51662.1. Different initiation.
PIRiAC3312.
RefSeqiNP_539398.2. NC_003317.1.

3D structure databases

ProteinModelPortaliQ8YIG3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224914.BMEI0481.

Proteomic databases

PRIDEiQ8YIG3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL51662; AAL51662; BMEI0481.
KEGGibme:BMEI0481.
PATRICi17851060. VBIBruMel92729_0540.

Phylogenomic databases

HOGENOMiHOG000214907.
KOiK02897.
OMAiYGGDKAP.
OrthoDBiEOG6SZ1PC.

Family and domain databases

Gene3Di2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPiMF_01334. Ribosomal_L25_CTC.
InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
[Graphical view]
PfamiPF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view]
ProDomiPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50715. SSF50715. 1 hit.
TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 16M / ATCC 23456 / NCTC 10094.

Entry informationi

Entry nameiRL25_BRUME
AccessioniPrimary (citable) accession number: Q8YIG3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 20, 2005
Last sequence update: June 20, 2005
Last modified: March 31, 2015
This is version 82 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella melitensis
    Brucella melitensis (strain 16M): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.