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Q8YIG3

- RL25_BRUME

UniProt

Q8YIG3 - RL25_BRUME

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Protein

50S ribosomal protein L25

Gene

rplY

Organism
Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotation

GO - Molecular functioni

  1. 5S rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L25UniRule annotation
Alternative name(s):
General stress protein CTCUniRule annotation
Gene namesi
Name:rplYUniRule annotation
Synonyms:ctcUniRule annotation
Ordered Locus Names:BMEI0481
OrganismiBrucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Taxonomic identifieri224914 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000000419: Chromosome I

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 20720750S ribosomal protein L25PRO_0000181525Add
BLAST

Proteomic databases

PRIDEiQ8YIG3.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotation

Protein-protein interaction databases

STRINGi224914.BMEI0481.

Structurei

3D structure databases

ProteinModelPortaliQ8YIG3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L25P family. CTC subfamily.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000214907.
KOiK02897.
OMAiKTPGIVY.
OrthoDBiEOG6SZ1PC.

Family and domain databases

Gene3Di2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPiMF_01334. Ribosomal_L25_CTC.
InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
[Graphical view]
PfamiPF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view]
ProDomiPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50715. SSF50715. 1 hit.
TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8YIG3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSETYVLKAD LRTRVGKGSS RELRRNGQIP AVIYGDKQEP LAIAVSYKEI
60 70 80 90 100
FYKIHGGGFK TTVATIEVDG KKIQVLPKDY QLDPVRDFPQ HVDFLRVSAK
110 120 130 140 150
SVVHVNVPVH FKNEEAAPGI KRGGVLNVVR HDVELIVPAN AIPEALEIDL
160 170 180 190 200
SGLEIGDSVH ISAVKLPKGA TPAIQDRDFT IATIAAPAGL KSEENAEGAA

EEAKDGE
Length:207
Mass (Da):22,383
Last modified:June 21, 2005 - v2
Checksum:i24DD3507AD4C5492
GO

Sequence cautioni

The sequence AAL51662.1 differs from that shown. Reason: Erroneous initiation.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE008917 Genomic DNA. Translation: AAL51662.1. Different initiation.
PIRiAC3312.
RefSeqiNP_539398.2. NC_003317.1.

Genome annotation databases

EnsemblBacteriaiAAL51662; AAL51662; BMEI0481.
GeneIDi1196192.
KEGGibme:BMEI0481.
PATRICi17851060. VBIBruMel92729_0540.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE008917 Genomic DNA. Translation: AAL51662.1 . Different initiation.
PIRi AC3312.
RefSeqi NP_539398.2. NC_003317.1.

3D structure databases

ProteinModelPortali Q8YIG3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 224914.BMEI0481.

Proteomic databases

PRIDEi Q8YIG3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAL51662 ; AAL51662 ; BMEI0481 .
GeneIDi 1196192.
KEGGi bme:BMEI0481.
PATRICi 17851060. VBIBruMel92729_0540.

Phylogenomic databases

HOGENOMi HOG000214907.
KOi K02897.
OMAi KTPGIVY.
OrthoDBi EOG6SZ1PC.

Family and domain databases

Gene3Di 2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPi MF_01334. Ribosomal_L25_CTC.
InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
[Graphical view ]
Pfami PF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view ]
ProDomi PD012503. Ribosomal_L25. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
SUPFAMi SSF50715. SSF50715. 1 hit.
TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 16M / ATCC 23456 / NCTC 10094.

Entry informationi

Entry nameiRL25_BRUME
AccessioniPrimary (citable) accession number: Q8YIG3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 21, 2005
Last sequence update: June 21, 2005
Last modified: October 29, 2014
This is version 80 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella melitensis
    Brucella melitensis (strain 16M): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3