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Q8YIG3

- RL25_BRUME

UniProt

Q8YIG3 - RL25_BRUME

Protein

50S ribosomal protein L25

Gene

rplY

Organism
Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 79 (01 Oct 2014)
      Sequence version 2 (21 Jun 2005)
      Previous versions | rss
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    Functioni

    This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotation

    GO - Molecular functioni

    1. 5S rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L25UniRule annotation
    Alternative name(s):
    General stress protein CTCUniRule annotation
    Gene namesi
    Name:rplYUniRule annotation
    Synonyms:ctcUniRule annotation
    Ordered Locus Names:BMEI0481
    OrganismiBrucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
    Taxonomic identifieri224914 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
    ProteomesiUP000000419: Chromosome I

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 20720750S ribosomal protein L25PRO_0000181525Add
    BLAST

    Proteomic databases

    PRIDEiQ8YIG3.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotation

    Protein-protein interaction databases

    STRINGi224914.BMEI0481.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8YIG3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L25P family. CTC subfamily.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000214907.
    KOiK02897.
    OMAiKTPGIVY.
    OrthoDBiEOG6SZ1PC.

    Family and domain databases

    Gene3Di2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPiMF_01334. Ribosomal_L25_CTC.
    InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    [Graphical view]
    PfamiPF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50715. SSF50715. 1 hit.
    TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q8YIG3-1 [UniParc]FASTAAdd to Basket

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    MSETYVLKAD LRTRVGKGSS RELRRNGQIP AVIYGDKQEP LAIAVSYKEI    50
    FYKIHGGGFK TTVATIEVDG KKIQVLPKDY QLDPVRDFPQ HVDFLRVSAK 100
    SVVHVNVPVH FKNEEAAPGI KRGGVLNVVR HDVELIVPAN AIPEALEIDL 150
    SGLEIGDSVH ISAVKLPKGA TPAIQDRDFT IATIAAPAGL KSEENAEGAA 200
    EEAKDGE 207
    Length:207
    Mass (Da):22,383
    Last modified:June 21, 2005 - v2
    Checksum:i24DD3507AD4C5492
    GO

    Sequence cautioni

    The sequence AAL51662.1 differs from that shown. Reason: Erroneous initiation.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE008917 Genomic DNA. Translation: AAL51662.1. Different initiation.
    PIRiAC3312.
    RefSeqiNP_539398.2. NC_003317.1.

    Genome annotation databases

    EnsemblBacteriaiAAL51662; AAL51662; BMEI0481.
    GeneIDi1196192.
    KEGGibme:BMEI0481.
    PATRICi17851060. VBIBruMel92729_0540.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE008917 Genomic DNA. Translation: AAL51662.1 . Different initiation.
    PIRi AC3312.
    RefSeqi NP_539398.2. NC_003317.1.

    3D structure databases

    ProteinModelPortali Q8YIG3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 224914.BMEI0481.

    Proteomic databases

    PRIDEi Q8YIG3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAL51662 ; AAL51662 ; BMEI0481 .
    GeneIDi 1196192.
    KEGGi bme:BMEI0481.
    PATRICi 17851060. VBIBruMel92729_0540.

    Phylogenomic databases

    HOGENOMi HOG000214907.
    KOi K02897.
    OMAi KTPGIVY.
    OrthoDBi EOG6SZ1PC.

    Family and domain databases

    Gene3Di 2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPi MF_01334. Ribosomal_L25_CTC.
    InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    [Graphical view ]
    Pfami PF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50715. SSF50715. 1 hit.
    TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 16M / ATCC 23456 / NCTC 10094.

    Entry informationi

    Entry nameiRL25_BRUME
    AccessioniPrimary (citable) accession number: Q8YIG3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 21, 2005
    Last sequence update: June 21, 2005
    Last modified: October 1, 2014
    This is version 79 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Brucella melitensis
      Brucella melitensis (strain 16M): entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3