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Q8YHN9 (RL4_BRUME) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L4
Gene names
Name:rplD
Ordered Locus Names:BMEI0758
OrganismBrucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) [Complete proteome] [HAMAP]
Taxonomic identifier224914 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella

Protein attributes

Sequence length206 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome By similarity. HAMAP-Rule MF_01328_B

Forms part of the polypeptide exit tunnel By similarity. HAMAP-Rule MF_01328_B

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01328_B

Sequence similarities

Belongs to the ribosomal protein L4P family.

Sequence caution

The sequence AAL51939.1 differs from that shown. Reason: Frameshift at position 167.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 20620650S ribosomal protein L4 HAMAP-Rule MF_01328_B
PRO_0000129193

Sequences

Sequence LengthMass (Da)Tools
Q8YHN9 [UniParc].

Last modified August 16, 2004. Version 2.
Checksum: 1CE73FA611BD2557

FASTA20622,561
        10         20         30         40         50         60 
MDLTITTLEG KDAGKVKLNE EIFGLDPRDD ILQRVVRWQL ARRQQGSHKA QGRGDVSRTG 

        70         80         90        100        110        120 
SKMYKQKGTG RARHHSARAP QFRGGGQAHG PVVRNHDHDL PKKVRALGLR HALSAKAKAS 

       130        140        150        160        170        180 
DLIIIDDLAS ADAKTKQLVS QFAKLGLENA LLIGGAEIDA NFQRAASNIP NIDVLPVQGI 

       190        200 
NVYDILRRGK LVLSKAAVEA LEERFK 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE008917 Genomic DNA. Translation: AAL51939.1. Frameshift.
PIRAH3346.
RefSeqNP_539675.1. NC_003317.1.

3D structure databases

ProteinModelPortalQ8YHN9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING224914.BMEI0758.

Proteomic databases

PRIDEQ8YHN9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAL51939; AAL51939; BMEI0758.
GeneID1196469.
KEGGbme:BMEI0758.
PATRIC17851703. VBIBruMel92729_0855.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000248767.
KOK02926.
OrthoDBEOG6M0T9G.

Enzyme and pathway databases

BioCycBMEL224914:GCJ0-785-MONOMER.

Family and domain databases

Gene3D3.40.1370.10. 1 hit.
HAMAPMF_01328_B. Ribosomal_L4_B.
InterProIPR002136. Ribosomal_L4/L1e.
IPR013005. Ribosomal_L4/L1e_bac-type.
IPR023574. Ribosomal_L4_dom.
[Graphical view]
PANTHERPTHR10746. PTHR10746. 1 hit.
PfamPF00573. Ribosomal_L4. 1 hit.
[Graphical view]
SUPFAMSSF52166. SSF52166. 1 hit.
TIGRFAMsTIGR03953. rplD_bact. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRL4_BRUME
AccessionPrimary (citable) accession number: Q8YHN9
Entry history
Integrated into UniProtKB/Swiss-Prot: April 26, 2004
Last sequence update: August 16, 2004
Last modified: May 14, 2014
This is version 63 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

Brucella melitensis

Brucella melitensis (strain 16M): entries and gene names