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Q8YHM5

- RL6_BRUME

UniProt

Q8YHM5 - RL6_BRUME

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Protein
50S ribosomal protein L6
Gene
rplF, BMEI0772
Organism
Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6
Gene namesi
Name:rplF
Ordered Locus Names:BMEI0772
OrganismiBrucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Taxonomic identifieri224914 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000000419: Chromosome I

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 17717750S ribosomal protein L6UniRule annotation
PRO_0000265228Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi224914.BMEI0772.

Structurei

3D structure databases

ProteinModelPortaliQ8YHM5.
SMRiQ8YHM5. Positions 2-177.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000039903.
KOiK02933.
OMAiGNVITFA.
OrthoDBiEOG67DPRD.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.
PROSITEiPS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8YHM5-1 [UniParc]FASTAAdd to Basket

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MSRIGKKPVP VPAGVTASVE GQTVKAKGAK GELSFVVHDE VLVKMEDGAV    50
RVDPRDQSRE ARSKWGMSRT MISNIFVGVK DGFEKKLEIS GVGYRAAMQG 100
KNLQLSLGFS HEVVYDVPAG ITVAVPKPTE IVVTGIDKQQ VGQVAAEIRE 150
YRGPEPYKGK GVKYAGEKIV RKEGKKK 177
Length:177
Mass (Da):19,180
Last modified:March 1, 2002 - v1
Checksum:iD0285EB706C20041
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE008917 Genomic DNA. Translation: AAL51953.1.
PIRiAF3348.
RefSeqiNP_539689.1. NC_003317.1.

Genome annotation databases

EnsemblBacteriaiAAL51953; AAL51953; BMEI0772.
GeneIDi1196483.
KEGGibme:BMEI0772.
PATRICi17801702. VBIBruMel146950_3171.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE008917 Genomic DNA. Translation: AAL51953.1 .
PIRi AF3348.
RefSeqi NP_539689.1. NC_003317.1.

3D structure databases

ProteinModelPortali Q8YHM5.
SMRi Q8YHM5. Positions 2-177.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 224914.BMEI0772.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAL51953 ; AAL51953 ; BMEI0772 .
GeneIDi 1196483.
KEGGi bme:BMEI0772.
PATRICi 17801702. VBIBruMel146950_3171.

Phylogenomic databases

HOGENOMi HOG000039903.
KOi K02933.
OMAi GNVITFA.
OrthoDBi EOG67DPRD.

Family and domain databases

Gene3Di 3.90.930.12. 2 hits.
HAMAPi MF_01365_B. Ribosomal_L6_B.
InterProi IPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view ]
PANTHERi PTHR11655. PTHR11655. 1 hit.
Pfami PF00347. Ribosomal_L6. 2 hits.
[Graphical view ]
PIRSFi PIRSF002162. Ribosomal_L6. 1 hit.
PRINTSi PR00059. RIBOSOMALL6.
SUPFAMi SSF56053. SSF56053. 2 hits.
TIGRFAMsi TIGR03654. L6_bact. 1 hit.
PROSITEi PS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 16M / ATCC 23456 / NCTC 10094.

Entry informationi

Entry nameiRL6_BRUME
AccessioniPrimary (citable) accession number: Q8YHM5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: March 1, 2002
Last modified: June 11, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella melitensis
    Brucella melitensis (strain 16M): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi