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Protein

50S ribosomal protein L6

Gene

rplF

Organism
Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Gene namesi
Name:rplFUniRule annotation
Ordered Locus Names:BMEI0772
OrganismiBrucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Taxonomic identifieri224914 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
Proteomesi
  • UP000000419 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002652281 – 17750S ribosomal protein L6Add BLAST177

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi224914.BAWG_2744.

Structurei

3D structure databases

ProteinModelPortaliQ8YHM5.
SMRiQ8YHM5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL6 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108R5J. Bacteria.
COG0097. LUCA.
HOGENOMiHOG000039903.
KOiK02933.
OMAiKPDPYKG.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
HAMAPiMF_01365_B. Ribosomal_L6_B. 1 hit.
InterProiView protein in InterPro
IPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
PANTHERiPTHR11655. PTHR11655. 1 hit.
PTHR11655:SF21. PTHR11655:SF21. 1 hit.
PfamiView protein in Pfam
PF00347. Ribosomal_L6. 2 hits.
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSiPR00059. RIBOSOMALL6.
SUPFAMiSSF56053. SSF56053. 2 hits.
TIGRFAMsiTIGR03654. L6_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00525. RIBOSOMAL_L6_1. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8YHM5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRIGKKPVP VPAGVTASVE GQTVKAKGAK GELSFVVHDE VLVKMEDGAV
60 70 80 90 100
RVDPRDQSRE ARSKWGMSRT MISNIFVGVK DGFEKKLEIS GVGYRAAMQG
110 120 130 140 150
KNLQLSLGFS HEVVYDVPAG ITVAVPKPTE IVVTGIDKQQ VGQVAAEIRE
160 170
YRGPEPYKGK GVKYAGEKIV RKEGKKK
Length:177
Mass (Da):19,180
Last modified:March 1, 2002 - v1
Checksum:iD0285EB706C20041
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008917 Genomic DNA. Translation: AAL51953.1.
PIRiAF3348.
RefSeqiWP_004686961.1. NZ_GG703780.1.

Genome annotation databases

EnsemblBacteriaiAAL51953; AAL51953; BMEI0772.
GeneIDi29593582.
KEGGibme:BMEI0772.
bmel:DK63_650.
PATRICifig|224914.52.peg.681.

Similar proteinsi

Entry informationi

Entry nameiRL6_BRUME
AccessioniPrimary (citable) accession number: Q8YHM5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: March 1, 2002
Last modified: August 30, 2017
This is version 89 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella melitensis
    Brucella melitensis (strain 16M): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families