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Protein

30S ribosomal protein S4

Gene

rpsD

Organism
Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.UniRule annotation
With S5 and S12 plays an important role in translational accuracy.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S4UniRule annotation
Gene namesi
Name:rpsDUniRule annotation
Ordered Locus Names:BMEI1133
OrganismiBrucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Taxonomic identifieri224914 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
Proteomesi
  • UP000000419 Componenti: Chromosome I

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001323511 – 20530S ribosomal protein S4Add BLAST205

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.UniRule annotation

Protein-protein interaction databases

STRINGi224914.BAWG_1076.

Structurei

3D structure databases

ProteinModelPortaliQ8YGM5.
SMRiQ8YGM5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini94 – 157S4 RNA-bindingUniRule annotationAdd BLAST64

Sequence similaritiesi

Belongs to the universal ribosomal protein uS4 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105G6W. Bacteria.
COG0522. LUCA.
HOGENOMiHOG000221004.
KOiK02986.
OMAiNVVFRMG.

Family and domain databases

CDDicd00165. S4. 1 hit.
Gene3Di3.10.290.10. 1 hit.
HAMAPiMF_01306_B. Ribosomal_S4_B. 1 hit.
InterProiView protein in InterPro
IPR022801. Ribosomal_S4/S9.
IPR001912. Ribosomal_S4/S9_N.
IPR005709. Ribosomal_S4_bac-type.
IPR018079. Ribosomal_S4_CS.
IPR002942. S4_RNA-bd.
IPR036986. S4_RNA-bd_sf.
PANTHERiPTHR11831. PTHR11831. 1 hit.
PTHR11831:SF4. PTHR11831:SF4. 1 hit.
PfamiView protein in Pfam
PF00163. Ribosomal_S4. 1 hit.
PF01479. S4. 1 hit.
SMARTiView protein in SMART
SM01390. Ribosomal_S4. 1 hit.
SM00363. S4. 1 hit.
TIGRFAMsiTIGR01017. rpsD_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00632. RIBOSOMAL_S4. 1 hit.
PS50889. S4. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8YGM5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKRESAKYK IDRRLGENIW GRPKSPVNRR EYGPGQHGQR RKGKLSDFGV
60 70 80 90 100
QLRAKQKLKG FYGDISEKQF RKTYEEAARR KGDTGENLIG LLESRLDAVV
110 120 130 140 150
YRAKFVPTIF AARQFINHGH VNVNGRRVNI QSYRLKVGDV VEVREKSKQL
160 170 180 190 200
AIVLEAVQLA ERDVPDYIDV DHNKMVATYN RVPGLSDVPY AVQMEPNLVV

EFYSR
Length:205
Mass (Da):23,592
Last modified:March 1, 2002 - v1
Checksum:iE96A82AA15F53C51
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008917 Genomic DNA. Translation: AAL52314.1.
PIRiAG3393.
RefSeqiWP_002967582.1. NZ_GG703778.1.

Genome annotation databases

EnsemblBacteriaiAAL52314; AAL52314; BMEI1133.
GeneIDi29593968.
KEGGibme:BMEI1133.
bmel:DK63_280.
PATRICifig|224914.52.peg.289.

Similar proteinsi

Entry informationi

Entry nameiRS4_BRUME
AccessioniPrimary (citable) accession number: Q8YGM5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 6, 2002
Last sequence update: March 1, 2002
Last modified: October 25, 2017
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella melitensis
    Brucella melitensis (strain 16M): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families