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Protein

Ribosome-binding factor A

Gene

rbfA

Organism
Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.UniRule annotation

GO - Biological processi

  1. rRNA processing Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Biological processi

rRNA processing

Enzyme and pathway databases

BioCyciBMEL224914:GCJ0-2011-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome-binding factor AUniRule annotation
Gene namesi
Name:rbfAUniRule annotation
Ordered Locus Names:BMEI1964
OrganismiBrucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)
Taxonomic identifieri224914 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBrucellaceaeBrucella
ProteomesiUP000000419: Chromosome I

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 150150Ribosome-binding factor APRO_0000102632Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi224914.BMEI1964.

Structurei

3D structure databases

ProteinModelPortaliQ8YEB4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RbfA family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000218324.
KOiK02834.
OMAiVARDLHH.
OrthoDBiEOG6XQ3TJ.

Family and domain databases

Gene3Di3.30.300.20. 1 hit.
HAMAPiMF_00003. RbfA.
InterProiIPR015946. KH_dom-like_a/b.
IPR000238. Ribosome-bd_facA.
IPR023799. Ribosome-bd_facA_dom.
IPR020053. Ribosome-bd_factorA_CS.
[Graphical view]
PfamiPF02033. RBFA. 1 hit.
[Graphical view]
ProDomiPD007327. Rib_bd_factA. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF89919. SSF89919. 1 hit.
TIGRFAMsiTIGR00082. rbfA. 1 hit.
PROSITEiPS01319. RBFA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8YEB4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARSHDTKGS GGLSQRQLRV GEQVRHALAQ VLQRGEIRDD LIERTVISVS
60 70 80 90 100
EVRMSPDLKI ATCFITPLGS ADPQAVIKAL ASHAKFIRGR VAPSLAQMKY
110 120 130 140 150
MPEFRFRPDT SFDNFSKIDA LLRFPEVARD LSHDDDEDGG ADEAPRNGDE
Length:150
Mass (Da):16,633
Last modified:May 15, 2002 - v2
Checksum:i0BC5A220A3DD4F0D
GO

Sequence cautioni

The sequence AAL53145.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008917 Genomic DNA. Translation: AAL53145.1. Different initiation.
PIRiAF3497.
RefSeqiNP_540881.1. NC_003317.1.

Genome annotation databases

EnsemblBacteriaiAAL53145; AAL53145; BMEI1964.
GeneIDi1197675.
KEGGibme:BMEI1964.
PATRICi17854369. VBIBruMel92729_2168.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE008917 Genomic DNA. Translation: AAL53145.1. Different initiation.
PIRiAF3497.
RefSeqiNP_540881.1. NC_003317.1.

3D structure databases

ProteinModelPortaliQ8YEB4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224914.BMEI1964.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL53145; AAL53145; BMEI1964.
GeneIDi1197675.
KEGGibme:BMEI1964.
PATRICi17854369. VBIBruMel92729_2168.

Phylogenomic databases

HOGENOMiHOG000218324.
KOiK02834.
OMAiVARDLHH.
OrthoDBiEOG6XQ3TJ.

Enzyme and pathway databases

BioCyciBMEL224914:GCJ0-2011-MONOMER.

Family and domain databases

Gene3Di3.30.300.20. 1 hit.
HAMAPiMF_00003. RbfA.
InterProiIPR015946. KH_dom-like_a/b.
IPR000238. Ribosome-bd_facA.
IPR023799. Ribosome-bd_facA_dom.
IPR020053. Ribosome-bd_factorA_CS.
[Graphical view]
PfamiPF02033. RBFA. 1 hit.
[Graphical view]
ProDomiPD007327. Rib_bd_factA. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF89919. SSF89919. 1 hit.
TIGRFAMsiTIGR00082. rbfA. 1 hit.
PROSITEiPS01319. RBFA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 16M / ATCC 23456 / NCTC 10094.

Entry informationi

Entry nameiRBFA_BRUME
AccessioniPrimary (citable) accession number: Q8YEB4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 15, 2002
Last sequence update: May 15, 2002
Last modified: January 7, 2015
This is version 73 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Brucella melitensis
    Brucella melitensis (strain 16M): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.