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Q8Y6I1

- Y1703_LISMO

UniProt

Q8Y6I1 - Y1703_LISMO

Protein

Uncharacterized RNA methyltransferase lmo1703

Gene

lmo1703

Organism
Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 72 (01 Oct 2014)
      Sequence version 1 (01 Mar 2002)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi76 – 761Iron-sulfur (4Fe-4S)By similarity
    Metal bindingi82 – 821Iron-sulfur (4Fe-4S)By similarity
    Metal bindingi85 – 851Iron-sulfur (4Fe-4S)By similarity
    Metal bindingi166 – 1661Iron-sulfur (4Fe-4S)By similarity
    Binding sitei290 – 2901S-adenosyl-L-methioninePROSITE-ProRule annotation
    Binding sitei319 – 3191S-adenosyl-L-methionine; via carbonyl oxygenPROSITE-ProRule annotation
    Binding sitei340 – 3401S-adenosyl-L-methioninePROSITE-ProRule annotation
    Binding sitei388 – 3881S-adenosyl-L-methioninePROSITE-ProRule annotation
    Active sitei415 – 4151NucleophilePROSITE-ProRule annotation

    GO - Molecular functioni

    1. 4 iron, 4 sulfur cluster binding Source: UniProtKB-KW
    2. metal ion binding Source: UniProtKB-KW
    3. RNA binding Source: InterPro
    4. RNA methyltransferase activity Source: InterPro

    GO - Biological processi

    1. RNA processing Source: InterPro

    Keywords - Molecular functioni

    Methyltransferase, Transferase

    Keywords - Ligandi

    4Fe-4S, Iron, Iron-sulfur, Metal-binding, S-adenosyl-L-methionine

    Enzyme and pathway databases

    BioCyciLMON169963:LMO1703-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized RNA methyltransferase lmo1703 (EC:2.1.1.-)
    Gene namesi
    Ordered Locus Names:lmo1703
    OrganismiListeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
    Taxonomic identifieri169963 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesListeriaceaeListeria
    ProteomesiUP000000817: Chromosome

    Organism-specific databases

    GenoListiLMO1703.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 459459Uncharacterized RNA methyltransferase lmo1703PRO_0000162001Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi169963.lmo1703.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8Y6I1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini5 – 6359TRAMPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.PROSITE-ProRule annotation
    Contains 1 TRAM domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG2265.
    HOGENOMiHOG000029867.
    KOiK00599.
    OMAiYISCNAS.
    OrthoDBiEOG6V4GKM.
    PhylomeDBiQ8Y6I1.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    3.40.50.150. 1 hit.
    InterProiIPR001566. 23S_rRNA_MeTrfase_RlmD.
    IPR012340. NA-bd_OB-fold.
    IPR029063. SAM-dependent_MTases-like.
    IPR002792. TRAM_dom.
    IPR010280. U5_MeTrfase_fam.
    [Graphical view]
    PfamiPF01938. TRAM. 1 hit.
    PF05958. tRNA_U5-meth_tr. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    SSF53335. SSF53335. 1 hit.
    TIGRFAMsiTIGR00479. rumA. 1 hit.
    PROSITEiPS51687. SAM_MT_RNA_M5U. 1 hit.
    PS50926. TRAM. 1 hit.
    PS01230. TRMA_1. 1 hit.
    PS01231. TRMA_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8Y6I1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNQNPVEEGQ KFPLTIRRMG INGEGIGYFK KAVVFVPGAI TGEEVVVEAV    50
    KVRDRFTEAK LNKIRKKSPN RVTAPCPVYE ACGGCQLQHV AYSAQLELKR 100
    DIVIQSIEKH TKIDPTKLKI RPTIGMEDPW RYRNKSQFQT RMVGSGQVET 150
    GLFGANSHQL VPIEDCIVQQ PVTIKVTNFV RDLLEKYGVP IYDEKAGSGI 200
    VRTIVVRTGV KTGETQLVFI TNSKKLPKKR EMLAEIEAAL PEVTSIMQNV 250
    NQAKSSLIFG DETFLLAGKE SIEEKLMELE FDLSARAFFQ LNPFQTERLY 300
    QEVEKALVLT GSETLVDAYC GVGTIGQAFA GKVKEVRGMD IIPESIEDAK 350
    RNAEKNGIEN VYYEVGKAED VLPKWVKEGF RPDAVIVDPP RSGCDQGLIK 400
    SLLDVEAKQL VYVSCNPSTL ARDLALLAKK YRIRYMQPVD MFPQTAHVET 450
    VVLLQLKDK 459
    Length:459
    Mass (Da):51,325
    Last modified:March 1, 2002 - v1
    Checksum:iA582F57A42595F06
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL591981 Genomic DNA. Translation: CAC99781.1.
    PIRiAG1287.
    RefSeqiNP_465228.1. NC_003210.1.

    Genome annotation databases

    EnsemblBacteriaiCAC99781; CAC99781; CAC99781.
    GeneIDi985603.
    KEGGilmo:lmo1703.
    PATRICi20312587. VBILisMon69206_1746.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL591981 Genomic DNA. Translation: CAC99781.1 .
    PIRi AG1287.
    RefSeqi NP_465228.1. NC_003210.1.

    3D structure databases

    ProteinModelPortali Q8Y6I1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 169963.lmo1703.

    Protocols and materials databases

    DNASUi 985603.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAC99781 ; CAC99781 ; CAC99781 .
    GeneIDi 985603.
    KEGGi lmo:lmo1703.
    PATRICi 20312587. VBILisMon69206_1746.

    Organism-specific databases

    GenoListi LMO1703.

    Phylogenomic databases

    eggNOGi COG2265.
    HOGENOMi HOG000029867.
    KOi K00599.
    OMAi YISCNAS.
    OrthoDBi EOG6V4GKM.
    PhylomeDBi Q8Y6I1.

    Enzyme and pathway databases

    BioCyci LMON169963:LMO1703-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    3.40.50.150. 1 hit.
    InterProi IPR001566. 23S_rRNA_MeTrfase_RlmD.
    IPR012340. NA-bd_OB-fold.
    IPR029063. SAM-dependent_MTases-like.
    IPR002792. TRAM_dom.
    IPR010280. U5_MeTrfase_fam.
    [Graphical view ]
    Pfami PF01938. TRAM. 1 hit.
    PF05958. tRNA_U5-meth_tr. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    SSF53335. SSF53335. 1 hit.
    TIGRFAMsi TIGR00479. rumA. 1 hit.
    PROSITEi PS51687. SAM_MT_RNA_M5U. 1 hit.
    PS50926. TRAM. 1 hit.
    PS01230. TRMA_1. 1 hit.
    PS01231. TRMA_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-679 / EGD-e.

    Entry informationi

    Entry nameiY1703_LISMO
    AccessioniPrimary (citable) accession number: Q8Y6I1
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 19, 2004
    Last sequence update: March 1, 2002
    Last modified: October 1, 2014
    This is version 72 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3