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Protein
Submitted name:

Probable dna-binding protein hu-beta (Ns1) (Hu-1)

Gene

hupB2

Organism
Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

DNA condensationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotationImported

Enzyme and pathway databases

BioCyciRSOL267608:GCVU-2563-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Probable dna-binding protein hu-beta (Ns1) (Hu-1)Imported
Gene namesi
Name:hupB2Imported
Ordered Locus Names:RSc2521Imported
OrganismiRalstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum)Imported
Taxonomic identifieri267608 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeRalstonia
Proteomesi
  • UP000001436 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi267608.RSc2521.

Structurei

3D structure databases

ProteinModelPortaliQ8XWF3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili12 – 3928Sequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the bacterial histone-like protein family.UniRule annotationSAAS annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4105K70. Bacteria.
COG0776. LUCA.
HOGENOMiHOG000043828.
KOiK03530.
OMAiTKDQANR.
OrthoDBiEOG615VS6.

Family and domain databases

Gene3Di4.10.520.10. 1 hit.
InterProiIPR000119. Hist_DNA-bd.
IPR020816. Histone-like_DNA-bd_CS.
IPR010992. IHF-like_DNA-bd_dom.
[Graphical view]
PfamiPF00216. Bac_DNA_binding. 1 hit.
[Graphical view]
PRINTSiPR01727. DNABINDINGHU.
SMARTiSM00411. BHL. 1 hit.
[Graphical view]
SUPFAMiSSF47729. SSF47729. 1 hit.
PROSITEiPS00045. HISTONE_LIKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8XWF3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTTKSELVAA IAKDAELSNA AAERALNSAL ENIKKTVAKG GTITLVGFGS
60 70 80 90
FSSGKRAART GRNPRTGEAI KIPATKTVKF TAGKGFKDAV NKKK
Length:94
Mass (Da):9,765
Last modified:March 1, 2002 - v1
Checksum:i183FA3CC723868E3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL646052 Genomic DNA. Translation: CAD16228.1.
RefSeqiWP_003272088.1. NC_003295.1.

Genome annotation databases

EnsemblBacteriaiCAD16228; CAD16228; RSc2521.
GeneIDi6287417.
KEGGirso:RSc2521.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL646052 Genomic DNA. Translation: CAD16228.1.
RefSeqiWP_003272088.1. NC_003295.1.

3D structure databases

ProteinModelPortaliQ8XWF3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi267608.RSc2521.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAD16228; CAD16228; RSc2521.
GeneIDi6287417.
KEGGirso:RSc2521.

Phylogenomic databases

eggNOGiENOG4105K70. Bacteria.
COG0776. LUCA.
HOGENOMiHOG000043828.
KOiK03530.
OMAiTKDQANR.
OrthoDBiEOG615VS6.

Enzyme and pathway databases

BioCyciRSOL267608:GCVU-2563-MONOMER.

Family and domain databases

Gene3Di4.10.520.10. 1 hit.
InterProiIPR000119. Hist_DNA-bd.
IPR020816. Histone-like_DNA-bd_CS.
IPR010992. IHF-like_DNA-bd_dom.
[Graphical view]
PfamiPF00216. Bac_DNA_binding. 1 hit.
[Graphical view]
PRINTSiPR01727. DNABINDINGHU.
SMARTiSM00411. BHL. 1 hit.
[Graphical view]
SUPFAMiSSF47729. SSF47729. 1 hit.
PROSITEiPS00045. HISTONE_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: GMI1000Imported.

Entry informationi

Entry nameiQ8XWF3_RALSO
AccessioniPrimary (citable) accession number: Q8XWF3
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: May 11, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.