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Q8XMY5 (Q8XMY5_CLOPE) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 88. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Name:nanJ EMBL BAB80259.1
OrganismClostridium perfringens (strain 13 / Type A) [Complete proteome] [HAMAP] EMBL BAB80259.1
Taxonomic identifier195102 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium

Protein attributes

Sequence length1173 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence similarities

Contains 1 fibronectin type-III domain. RuleBase RU000718

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region79 – 824Galactose binding PDB 2V72

Sites

Metal binding681Calcium; via carbonyl oxygen PDB 2V72
Metal binding711Calcium PDB 2V72
Metal binding731Calcium; via carbonyl oxygen PDB 2V72
Metal binding761Calcium PDB 2V72
Metal binding1741Calcium; via carbonyl oxygen PDB 2V72
Metal binding1751Calcium PDB 2V72
Binding site1101Galactose PDB 2V72

Sequences

Sequence LengthMass (Da)Tools
Q8XMY5 [UniParc].

Last modified March 1, 2002. Version 1.
Checksum: 276A1E0A43A788CA

FASTA1,173128,782
        10         20         30         40         50         60 
MKSKKIIATL VASLVISNMG GYLVKANPNV NHKAVIIEDR QAIIETAIPQ SEMTASATSE 

        70         80         90        100        110        120 
EGQDPASSAI DGNINTMWHT KWNGSDALPQ SLSVNLGKAR KVSSIAITPR TSGNNGFITK 

       130        140        150        160        170        180 
YEIHAINNGV ETLVAEGTWE ENNLVKTVTF DSPIDAEEIK ITAIQGVGGF ASIAELNVYE 

       190        200        210        220        230        240 
IKGEVDEIAN YGNLKITKEE ERLNITGDLE KFSSLDEGTI VTRFNMNDTS IQSLIGLSDG 

       250        260        270        280        290        300 
NKANNYFSLY VSGGKVGYEL RRQEGNGDFN VHHSADVTFN KGINTLALKI EKGVGAKIFL 

       310        320        330        340        350        360 
NGSLVKTVSD PNIKFLNAIN LNSGFIGKTD RANGYNEYLF RGNIDFMNIY DKPVSDNYLL 

       370        380        390        400        410        420 
RKTGETKAPS EDSLLPDDVY KTQPVELFYP GYLESRGYRI PALETTKKGT VLASIDVRNN 

       430        440        450        460        470        480 
GDHDAPNNNI DVGIRRKEVN GEWEEGKVIL DYPGKSAAID TSLMSATIEE NGIEKERIFL 

       490        500        510        520        530        540 
IVTHFPEGYG FPNTEGGSGY KEIDGKYYFI LKDAQNNEYT VREDGIVYNS EGNQTDYVMK 

       550        560        570        580        590        600 
NDKTLIQNGE EVGNALLSNS PLKAVGTAHI EMIYSDDDGK TWSEPEDLNP GLKKEWMKFF 

       610        620        630        640        650        660 
GTAPGKGIQI KNGEHKGRLV FPIYYTNQNN FQSSAVIYSD DFGETWKLGE SPIDTASVSS 

       670        680        690        700        710        720 
ETVSSGTQLT ECQVVEMPNG QLKLFMRNTG SYTKIATSFD GGATWHDEVP EDTSLREPYC 

       730        740        750        760        770        780 
QLSVINYSGK INGKDAIIFS NPDASSRVNG SVKVGLINEN GTYDNGEPRY EFDWIYNKTV 

       790        800        810        820        830        840 
KPGSFAYSCL TELPDGNLGL FYEGEGAGRM AYTEFDLNYL KFNASEDSPS ASVQSIEVLD 

       850        860        870        880        890        900 
EDLAYNSGEE VSIKVNFNQL VSIIGDRKIT LDIGGVDVPL NMVNYEGKSS AIFKGTIPEG 

       910        920        930        940        950        960 
INQGNYEIKL KENNTLELNT VYNKVSTFNG LDNTGINVQI GELKTTVGNS TIKVNDEVQV 

       970        980        990       1000       1010       1020 
GSAFEAILGI EGLNGDTEVY SAEYLFEYNV EAFILNEITS FNDSLFVKSK EVEPGKVRIL 

      1030       1040       1050       1060       1070       1080 
VASLGNEIEK DSDLVKVNLT PKISSELEVL GLTTALVGAG DGNTHDLELS SKEVKINEEA 

      1090       1100       1110       1120       1130       1140 
SGEIVVNPVQ NFEIPEINKK NVKLTWNAPI TTEGLEGYVI YKDGKKLSEV PAESTEFVVS 

      1150       1160       1170 
KLNRHTIYNF KVAAKYSNGE LSAKESKTIR TAR 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater."
Shimizu T., Ohtani K., Hirakawa H., Ohshima K., Yamashita A., Shiba T., Ogasawara N., Hattori M., Kuhara S., Hayashi H.
Proc. Natl. Acad. Sci. U.S.A. 99:996-1001(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 13 / Type A.
[2]"Carbohydrate recognition by a large sialidase toxin from Clostridium perfringens."
Boraston A.B., Ficko-Blean E., Healey M.
Biochemistry 46:11352-11360(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.25 ANGSTROMS) OF 42-180 IN COMPLEX WITH CALCIUM AND GALACTOSE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000016 Genomic DNA. Translation: BAB80259.1.
RefSeqNP_561469.1. NC_003366.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
2V72X-ray2.25A42-180[»]
ProteinModelPortalQ8XMY5.
SMRQ8XMY5. Positions 44-180, 185-367, 378-821.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-46267N.
STRING195102.CPE0553.

Protein family/group databases

CAZyCBM32. Carbohydrate-Binding Module Family 32.
CBM40. Carbohydrate-Binding Module Family 40.
GH33. Glycoside Hydrolase Family 33.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAB80259; BAB80259; BAB80259.
GeneID988807.
KEGGcpe:CPE0553.
PATRIC19495016. VBICloPer59675_0612.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000120093.
KOK01186.
OMAEMTASAT.
OrthoDBEOG61CM2G.

Enzyme and pathway databases

BioCycCPER195102:GJFM-591-MONOMER.

Family and domain databases

Gene3D2.120.10.10. 2 hits.
2.60.120.200. 1 hit.
2.60.120.260. 1 hit.
2.60.40.10. 1 hit.
InterProIPR008965. Carb-bd_dom.
IPR000421. Coagulation_fac_5/8-C_type_dom.
IPR008985. ConA-like_lec_gl_sf.
IPR013320. ConA-like_subgrp.
IPR003961. Fibronectin_type3.
IPR008979. Galactose-bd-like.
IPR004124. Glyco_hydro_33_N.
IPR013783. Ig-like_fold.
IPR026856. Sialidase_fam.
IPR021984. Sialidase_pen_C.
IPR011040. Sialidases.
[Graphical view]
PANTHERPTHR10628. PTHR10628. 1 hit.
PfamPF00754. F5_F8_type_C. 1 hit.
PF00041. fn3. 1 hit.
PF02973. Sialidase. 1 hit.
PF12135. Sialidase_penC. 1 hit.
[Graphical view]
SMARTSM00060. FN3. 1 hit.
[Graphical view]
SUPFAMSSF49265. SSF49265. 1 hit.
SSF49384. SSF49384. 1 hit.
SSF49785. SSF49785. 1 hit.
SSF49899. SSF49899. 1 hit.
SSF50939. SSF50939. 2 hits.
PROSITEPS50022. FA58C_3. 1 hit.
PS50853. FN3. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ8XMY5.

Entry information

Entry nameQ8XMY5_CLOPE
AccessionPrimary (citable) accession number: Q8XMY5
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: June 11, 2014
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)