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Protein
Submitted name:

Probable DNA binding protein

Gene

dbh

Organism
Clostridium perfringens (strain 13 / Type A)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

DNA condensationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciCPER195102:GJFM-2599-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Probable DNA binding proteinImported
Gene namesi
Name:dbhImported
OrganismiClostridium perfringens (strain 13 / Type A)Imported
Taxonomic identifieri195102 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
Proteomesi
  • UP000000818 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliQ8XHK4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the bacterial histone-like protein family.UniRule annotationSAAS annotation

Phylogenomic databases

HOGENOMiHOG000043828.
KOiK03530.
OMAiGSWSVSK.
OrthoDBiPOG091H01KX.

Family and domain databases

Gene3Di4.10.520.10. 1 hit.
InterProiIPR000119. Hist_DNA-bd.
IPR020816. Histone-like_DNA-bd_CS.
IPR010992. IHF-like_DNA-bd_dom.
[Graphical view]
PfamiPF00216. Bac_DNA_binding. 1 hit.
[Graphical view]
PRINTSiPR01727. DNABINDINGHU.
SMARTiSM00411. BHL. 1 hit.
[Graphical view]
SUPFAMiSSF47729. SSF47729. 1 hit.
PROSITEiPS00045. HISTONE_LIKE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8XHK4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKAELITSM AEKSNLTKKD AELALKAFIE SVSETLENGD KVQLVGFGTF
60 70 80 90
ETRVRAEREG RNPRTKEVIK IPASIAPVFK PGKELKERVN A
Length:91
Mass (Da):10,102
Last modified:March 1, 2002 - v1
Checksum:iBE7C02ECAC612EFA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000016 Genomic DNA. Translation: BAB82185.1.
RefSeqiWP_003450698.1. NC_003366.1.

Genome annotation databases

EnsemblBacteriaiBAB82185; BAB82185; BAB82185.
GeneIDi990857.
KEGGicpe:CPE2479.
PATRICi19499045. VBICloPer59675_2547.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000016 Genomic DNA. Translation: BAB82185.1.
RefSeqiWP_003450698.1. NC_003366.1.

3D structure databases

ProteinModelPortaliQ8XHK4.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB82185; BAB82185; BAB82185.
GeneIDi990857.
KEGGicpe:CPE2479.
PATRICi19499045. VBICloPer59675_2547.

Phylogenomic databases

HOGENOMiHOG000043828.
KOiK03530.
OMAiGSWSVSK.
OrthoDBiPOG091H01KX.

Enzyme and pathway databases

BioCyciCPER195102:GJFM-2599-MONOMER.

Family and domain databases

Gene3Di4.10.520.10. 1 hit.
InterProiIPR000119. Hist_DNA-bd.
IPR020816. Histone-like_DNA-bd_CS.
IPR010992. IHF-like_DNA-bd_dom.
[Graphical view]
PfamiPF00216. Bac_DNA_binding. 1 hit.
[Graphical view]
PRINTSiPR01727. DNABINDINGHU.
SMARTiSM00411. BHL. 1 hit.
[Graphical view]
SUPFAMiSSF47729. SSF47729. 1 hit.
PROSITEiPS00045. HISTONE_LIKE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ8XHK4_CLOPE
AccessioniPrimary (citable) accession number: Q8XHK4
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: September 7, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.