Q8WXF1 (PSPC1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 107.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Paraspeckle component 1 Alternative name(s): Paraspeckle protein 1 | ||||
| Gene names |
| ||||
| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 523 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Regulates, cooperatively with NONO and SFPQ, androgen receptor-mediated gene transcription activity in Sertoli cell line By similarity. Binds to poly(A), poly(G) and poly(U) RNA homopolymers By similarity. Together with NONO, required for the formation of nuclear paraspeckles. Ref.12 |
| Subunit structure | Forms heterodimers with NONO; this involves formation of a coiled coil domain by helices from both proteins. Found in a RNP complex with CAT2 transcribed nuclear RNA (CTN-RNA). Interaction with NONO is required for its targeting to paraspeckles and perinucleolar caps. Interacts with SFPQ By similarity. Ref.8 |
| Subcellular location | Nucleus › nucleolus. Nucleus matrix By similarity. Cytoplasm By similarity. Nucleus speckle. Note: In punctate subnuclear structures often located adjacent to splicing speckles, called paraspeckles. Colocalizes with NONO and SFPQ in paraspeckles and perinucleolar caps in a RNA-dependent manner. May cycles between paraspeckles and nucleolus. In telophase, when daughter nuclei form, localizes to perinucleolar caps. Ref.1 Ref.8 Ref.12 |
| Tissue specificity | Expressed in pancreas, kidney, skeletal muscle, liver, lung, placenta, brain and heart. Ref.1 |
| Sequence similarities | Belongs to the PSPC family. Contains 2 RRM (RNA recognition motif) domains. |
| Sequence caution | The sequence BAA91924.1 differs from that shown. Reason: Erroneous termination at position 14. Translated as Lys. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| NONO | Q15233 | 6 | EBI-1392258,EBI-350527 |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q8WXF1-1) Also known as: PSP1-alpha; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q8WXF1-2) Also known as: PSP1-beta; The sequence of this isoform differs from the canonical sequence as follows: 387-393: REQEMRM → GDKRKCG 394-523: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 523 | 523 | Paraspeckle component 1 | PRO_0000297540 | |||||||||||||||||||||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||||||||||||||||||||
| Domain | 82 – 154 | 73 | RRM 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Domain | 156 – 237 | 82 | RRM 2 | ||||||||||||||||||||||||||||||||||||||||||||
| Region | 125 – 358 | 234 | Sufficient for paraspeckles localization | ||||||||||||||||||||||||||||||||||||||||||||
| Region | 231 – 358 | 128 | Sufficient for perinucleolar caps localization and interaction with NONO | ||||||||||||||||||||||||||||||||||||||||||||
| Coiled coil | 283 – 377 | 95 | Potential | ||||||||||||||||||||||||||||||||||||||||||||
| Compositional bias | 394 – 516 | 123 | Gly-rich | ||||||||||||||||||||||||||||||||||||||||||||
Amino acid modifications | |||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 409 | 1 | Phosphoserine Ref.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 473 | 1 | Phosphoserine Ref.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 477 | 1 | Phosphoserine Ref.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 509 | 1 | Phosphoserine Ref.9 | ||||||||||||||||||||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 387 – 393 | 7 | REQEMRM → GDKRKCG in isoform 2. | VSP_027274 | |||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 394 – 523 | 130 | Missing in isoform 2. | VSP_027275 | |||||||||||||||||||||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||||||||||||||||||||
| Mutagenesis | 119 | 1 | F → A: Abolishes accumulation in paraspeckles, but not in perinucleolar caps; when associated with A-121; A-198 and A-200. Ref.8 | ||||||||||||||||||||||||||||||||||||||||||||
| Mutagenesis | 121 | 1 | F → A: Abolishes accumulation in paraspeckles, but not in perinucleolar caps; when associated with A-119; A-198 and A-200. Ref.8 | ||||||||||||||||||||||||||||||||||||||||||||
| Mutagenesis | 198 | 1 | K → A: Abolishes accumulation in paraspeckles, but not in perinucleolar caps; when associated with A-119; A-121 and A-200. Ref.8 | ||||||||||||||||||||||||||||||||||||||||||||
| Mutagenesis | 200 | 1 | F → A: Abolishes accumulation in paraspeckles, but not in perinucleolar caps; when associated with A-119; A-121 and A-198. Ref.8 | ||||||||||||||||||||||||||||||||||||||||||||
| Mutagenesis | 275 | 1 | Y → A: Abolishes interaction with NONO and localization in nuclear paraspeckles; when associated with A-279. Ref.12 | ||||||||||||||||||||||||||||||||||||||||||||
| Mutagenesis | 279 | 1 | W → A: Abolishes interaction with NONO and localization in nuclear paraspeckles; when associated with A-275. Ref.12 | ||||||||||||||||||||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 80 – 82 | 3 | |||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 83 – 88 | 6 | |||||||||||||||||||||||||||||||||||||||||||||
| Helix | 95 – 101 | 7 | |||||||||||||||||||||||||||||||||||||||||||||
| Helix | 102 – 105 | 4 | |||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 109 – 114 | 6 | |||||||||||||||||||||||||||||||||||||||||||||
| Turn | 115 – 118 | 4 | |||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 119 – 123 | 5 | |||||||||||||||||||||||||||||||||||||||||||||
| Helix | 127 – 137 | 11 | |||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 148 – 151 | 4 | |||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 155 – 162 | 8 | |||||||||||||||||||||||||||||||||||||||||||||
| Helix | 169 – 176 | 8 | |||||||||||||||||||||||||||||||||||||||||||||
| Helix | 177 – 179 | 3 | |||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 182 – 190 | 9 | |||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 195 – 205 | 11 | |||||||||||||||||||||||||||||||||||||||||||||
| Helix | 206 – 218 | 13 | |||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 221 – 226 | 6 | |||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 231 – 234 | 4 | |||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 238 – 242 | 5 | |||||||||||||||||||||||||||||||||||||||||||||
| Helix | 246 – 248 | 3 | |||||||||||||||||||||||||||||||||||||||||||||
| Helix | 253 – 259 | 7 | |||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 263 – 265 | 3 | |||||||||||||||||||||||||||||||||||||||||||||
| Helix | 271 – 318 | 48 | |||||||||||||||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Paraspeckles: a novel nuclear domain." Fox A.H., Lam Y.W., Leung A.K.L., Lyon C.E., Andersen J., Mann M., Lamond A.I. Curr. Biol. 12:13-25(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), PROTEIN SEQUENCE OF 21-83; 105-124; 135-143; 185-194; 199-210; 252-259; 265-289; 327-345; 352-357; 366-374 AND 483-507, MASS SPECTROMETRY, SUBCELLULAR LOCATION, TISSUE SPECIFICITY. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Placenta. |
| [3] | "The DNA sequence and analysis of human chromosome 13." Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T. Ross M.T.Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). Tissue: Skin. |
| [6] | "Cloning of human full open reading frames in Gateway(TM) system entry vector (pDONR201)." Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B. Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 37-523 (ISOFORM 2). |
| [7] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 192-523 (ISOFORM 2). Tissue: Kidney. |
| [8] | "P54nrb forms a heterodimer with PSP1 that localizes to paraspeckles in an RNA-dependent manner." Fox A.H., Bond C.S., Lamond A.I. Mol. Biol. Cell 16:5304-5315(2005) [PubMed] [Europe PMC] [Abstract] Cited for: SUBUNIT, INTERACTION WITH NONO, MUTAGENESIS OF PHE-119; PHE-121; LYS-198 AND PHE-200, SUBCELLULAR LOCATION. |
| [9] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-509, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [10] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-409; SER-473 AND SER-477, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [12] | "Structure of the heterodimer of human NONO and paraspeckle protein component 1 and analysis of its role in subnuclear body formation." Passon D.M., Lee M., Rackham O., Stanley W.A., Sadowska A., Filipovska A., Fox A.H., Bond C.S. Proc. Natl. Acad. Sci. U.S.A. 109:4846-4850(2012) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.9 ANGSTROMS) OF 61-320 IN COMPLEX WITH NONO, FUNCTION, SUBCELLULAR LOCATION, MUTAGENESIS OF TYR-275 AND TRP-279. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | AF448795 mRNA. Translation: AAL59601.1. AF449627 mRNA. Translation: AAL59602.1. AK001817 mRNA. Translation: BAA91924.1. Sequence problems. AL354808 Genomic DNA. Translation: CAI41004.1. AL354808 Genomic DNA. Translation: CAI41005.1. CH471075 Genomic DNA. Translation: EAX08232.1. BC014184 mRNA. Translation: AAH14184.2. CR457272 mRNA. Translation: CAG33553.1. AL834505 mRNA. Translation: CAD39162.1. | ||||||||||||
| IPI | IPI00103525. IPI00395775. | ||||||||||||
| RefSeq | NP_001035879.1. NM_001042414.2. | ||||||||||||
| UniGene | Hs.213198. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | Q8WXF1. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | Q8WXF1. 8 interactions. | ||||||||||||
| MINT | MINT-1395719. | ||||||||||||
| STRING | 9606.ENSP00000343966. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | Q8WXF1. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 74762636. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | Q8WXF1. | ||||||||||||
| PRIDE | Q8WXF1. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 55269. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000338910; ENSP00000343966; ENSG00000121390. ENST00000427943; ENSP00000393069; ENSG00000121390. ENST00000471658; ENSP00000436038; ENSG00000121390. ENST00000492741; ENSP00000435921; ENSG00000121390. | ||||||||||||
| GeneID | 55269. | ||||||||||||
| KEGG | hsa:55269. | ||||||||||||
| UCSC | uc021rgx.1. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 55269. | ||||||||||||
| GeneCards | GC13M020249. | ||||||||||||
| H-InvDB | HIX0011177. | ||||||||||||
| HGNC | HGNC:20320. PSPC1. | ||||||||||||
| HPA | HPA038904. | ||||||||||||
| MIM | 612408. gene. | ||||||||||||
| neXtProt | NX_Q8WXF1. | ||||||||||||
| PharmGKB | PA134968603. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | NOG298586. | ||||||||||||
| HOGENOM | HOG000231095. | ||||||||||||
| HOVERGEN | HBG009801. | ||||||||||||
| InParanoid | Q8WXF1. | ||||||||||||
| OMA | DNREQEM. | ||||||||||||
| OrthoDB | EOG444KKN. | ||||||||||||
| PhylomeDB | Q8WXF1. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | Q8WXF1. | ||||||||||||
| Bgee | Q8WXF1. | ||||||||||||
| CleanEx | HS_PSPC1. | ||||||||||||
| Genevestigator | Q8WXF1. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 3.30.70.330. 2 hits. | ||||||||||||
| InterPro | IPR012975. NOPS. IPR012677. Nucleotide-bd_a/b_plait. IPR000504. RRM_dom. [Graphical view] | ||||||||||||
| Pfam | PF08075. NOPS. 1 hit. PF00076. RRM_1. 2 hits. [Graphical view] | ||||||||||||
| SMART | SM00360. RRM. 2 hits. [Graphical view] | ||||||||||||
| PROSITE | PS50102. RRM. 2 hits. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| ChiTaRS | PSPC1. human. | ||||||||||||
| GenomeRNAi | 55269. | ||||||||||||
| NextBio | 59380. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | PSPC1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q8WXF1 Secondary accession number(s): Q5JTQ3 Q9NV36 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 13 Human chromosome 13: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
