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Protein

Leucine-rich repeat-containing protein 29

Gene

LRRC29

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Keywordsi

Biological processUbl conjugation pathway

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat-containing protein 29
Alternative name(s):
F-box and leucine-rich repeat protein 9
F-box protein FBL9
F-box/LRR-repeat protein 9
Gene namesi
Name:LRRC29
Synonyms:FBL9, FBXL9
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 16

Organism-specific databases

EuPathDBiHostDB:ENSG00000125122.14.
HGNCiHGNC:13605. LRRC29.

Pathology & Biotechi

Organism-specific databases

OpenTargetsiENSG00000125122.
PharmGKBiPA28029.

Polymorphism and mutation databases

BioMutaiLRRC29.
DMDMi38257689.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001198521 – 223Leucine-rich repeat-containing protein 29Add BLAST223

Proteomic databases

PaxDbiQ8WV35.
PRIDEiQ8WV35.

PTM databases

iPTMnetiQ8WV35.
PhosphoSitePlusiQ8WV35.

Expressioni

Tissue specificityi

Expressed in heart, kidney, liver, lung and pancreas.1 Publication

Gene expression databases

BgeeiENSG00000125122.
CleanExiHS_LRRC29.
ExpressionAtlasiQ8WV35. baseline and differential.
GenevisibleiQ8WV35. HS.

Organism-specific databases

HPAiHPA034998.

Interactioni

Subunit structurei

Part of a SCF (SKP1-cullin-F-box) protein ligase complex.By similarity

Binary interactionsi

Show more details

Protein-protein interaction databases

BioGridi117622. 5 interactors.
IntActiQ8WV35. 5 interactors.
STRINGi9606.ENSP00000344364.

Structurei

3D structure databases

ProteinModelPortaliQ8WV35.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati27 – 48LRR 1Add BLAST22
Repeati56 – 84LRR 2Add BLAST29
Repeati85 – 109LRR 3Add BLAST25
Repeati110 – 135LRR 4Add BLAST26
Domaini134 – 181F-boxAdd BLAST48
Repeati136 – 161LRR 5Add BLAST26
Repeati162 – 187LRR 6Add BLAST26
Repeati188 – 213LRR 7Add BLAST26

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiKOG1947. Eukaryota.
ENOG410XQ54. LUCA.
GeneTreeiENSGT00760000119059.
HOGENOMiHOG000059669.
HOVERGENiHBG081926.
InParanoidiQ8WV35.
KOiK10275.
OMAiATCPGIN.
OrthoDBiEOG091G00W1.
PhylomeDBiQ8WV35.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiView protein in InterPro
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR006553. Leu-rich_rpt_Cys-con_subtyp.
PfamiView protein in Pfam
PF00560. LRR_1. 1 hit.
PF13516. LRR_6. 1 hit.
SMARTiView protein in SMART
SM00367. LRR_CC. 5 hits.

Sequencei

Sequence statusi: Complete.

Q8WV35-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYSSGWPAGA AEPRHGRGRE LAQALGCMHG APSQLASLSL AHCSSLKSRP
60 70 80 90 100
ELEHQASGTK DACPEPQGPS LLTLRALQEL DLTACSKLTD ASLAKVLQFL
110 120 130 140 150
QLRQLSLSLL PELTDNGLVA VARGCPSLEH LALSHCSRLS DKGWAQAASS
160 170 180 190 200
WPRLQHLNLS SCSQLIEQTL DAIGQACRQL RVLDVATCPG INMAAVRRFQ
210 220
AQLPQVSCVQ SRFVGGADLT LTL
Length:223
Mass (Da):23,797
Last modified:March 1, 2002 - v1
Checksum:iADFBA9EC878BE46D
GO

Sequence cautioni

The sequence AAF03701 differs from that shown. Reason: Frameshift at position 13.Curated

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_04903175R → Q. Corresponds to variant dbSNP:rs3743728Ensembl.1
Natural variantiVAR_049032117G → S. Corresponds to variant dbSNP:rs34595673Ensembl.1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF176701 mRNA. Translation: AAF03701.1. Frameshift.
AK316602 mRNA. Translation: BAG38189.1.
CH471092 Genomic DNA. Translation: EAW83099.1.
BC018785 mRNA. Translation: AAH18785.1.
CCDSiCCDS32465.1.
RefSeqiNP_001004055.1. NM_001004055.1.
NP_036295.1. NM_012163.2.
XP_016878620.1. XM_017023131.1.
XP_016878621.1. XM_017023132.1.
XP_016878622.1. XM_017023133.1.
XP_016878623.1. XM_017023134.1.
UniGeneiHs.461000.

Genome annotation databases

EnsembliENST00000393992; ENSP00000377561; ENSG00000125122.
ENST00000629962; ENSP00000486223; ENSG00000125122.
GeneIDi26231.
KEGGihsa:26231.
UCSCiuc002esd.4. human.

Keywords - Coding sequence diversityi

Polymorphism

Similar proteinsi

Entry informationi

Entry nameiLRC29_HUMAN
AccessioniPrimary (citable) accession number: Q8WV35
Secondary accession number(s): B2RE92, Q9UKA0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 7, 2003
Last sequence update: March 1, 2002
Last modified: September 27, 2017
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 16
    Human chromosome 16: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations