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Protein
Submitted name:

Ribosomal Protein, Small subunit

Gene

rps-20

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • structural constituent of ribosome Source: WormBase

GO - Biological processi

  • cytoplasmic translation Source: GO_Central
  • translation Source: WormBase

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinImported

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Submitted name:
Ribosomal Protein, Small subunitImported
Gene namesi
Name:rps-20Imported
ORF Names:CELE_Y105E8A.16Imported, Y105E8A.16Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiY105E8A.16; CE29835; WBGene00004489; rps-20.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: WormBase

PTM / Processingi

Proteomic databases

EPDiQ8WQA8.
PaxDbiQ8WQA8.
PeptideAtlasiQ8WQA8.

Expressioni

Gene expression databases

BgeeiWBGene00004489.

Interactioni

Protein-protein interaction databases

DIPiDIP-25099N.
IntActiQ8WQA8. 1 interactor.
MINTiMINT-1100749.
STRINGi6239.Y105E8A.16.1.

Structurei

3D structure databases

ProteinModelPortaliQ8WQA8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 114Ribosomal_S10InterPro annotationAdd BLAST95

Phylogenomic databases

eggNOGiKOG0900. Eukaryota.
COG0051. LUCA.
GeneTreeiENSGT00390000003248.
HOGENOMiHOG000270245.
InParanoidiQ8WQA8.
KOiK02969.
OMAiWDRYELK.
OrthoDBiEOG091G0VNB.
PhylomeDBiQ8WQA8.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiView protein in InterPro
IPR001848. Ribosomal_S10.
IPR027486. Ribosomal_S10_dom.
IPR005729. Ribosomal_S10_euk/arc.
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiView protein in Pfam
PF00338. Ribosomal_S10. 1 hit.
PRINTSiPR00971. RIBOSOMALS10.
SMARTiView protein in SMART
SM01403. Ribosomal_S10. 1 hit.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01046. uS10_euk_arch. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8WQA8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVAFKNEKA ITDNSEHRIR LTLTSQNVKP LEKVCAQLID GAKNEHLIVK
60 70 80 90 100
GPIRMPTKVL RITTRKTPCG EGSKTWDRFQ MRIHKRLINL HAPAEVLRQI
110
TSISIEPGVD IEVTRAD
Length:117
Mass (Da):13,234
Last modified:March 1, 2002 - v1
Checksum:iDE351C710B24768B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CAD21665.1.
RefSeqiNP_740944.1. NM_170948.4.
UniGeneiCel.6570.

Genome annotation databases

EnsemblMetazoaiY105E8A.16.1; Y105E8A.16.1; WBGene00004489.
Y105E8A.16.2; Y105E8A.16.2; WBGene00004489.
GeneIDi173309.
KEGGicel:CELE_Y105E8A.16.
UCSCiY105E8A.16.2. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiQ8WQA8_CAEEL
AccessioniPrimary (citable) accession number: Q8WQA8
Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: July 5, 2017
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported