Ply protein - Listeria phage PSA

Preferred order of sections

Names and origin

Protein names

Submitted name:
Ply protein EMBL CAC85577.1

Gene names

Name:

ply EMBL CAC85577.1

Organism

Listeria phage PSA EMBL CAC85577.1

Taxonomic identifier

171618 [NCBI]

Taxonomic lineage

Viruses › dsDNA viruses, no RNA stage › Caudovirales › Siphoviridae

Protein attributes

Sequence length	314 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Metal-binding PDB 1XOV Zinc PDB 1XOV
Technical term	3D-structure PDB 1XOV
Gene Ontology (GO)
Biological process	peptidoglycan catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	N-acetylmuramoyl-L-alanine amidase activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Metal binding

10

1

Zinc; via tele nitrogen PDB 1XOV

Metal binding

23

1

Zinc PDB 1XOV

Metal binding

79

1

Zinc; via pros nitrogen PDB 1XOV

Sequences

Sequence

Length

Mass (Da)

Tools

Q8W5Y8 [UniParc].

Last modified March 1, 2002. Version 1.
Checksum: 184620FBE1958494
Show »

FASTA

314

35,257

        10         20         30         40         50         60 
MSNYSMSRGH SDKCVGAEDI LSEIKEAEKV LNAASDELKR EGHNVKTFID RTSTTQSANL 

        70         80         90        100        110        120 
NKIVNWHNAN PADVHISVHL NAGKGTGVEV WYYAGDEKGR KLAVEISAKM AKALGLPNRG 

       130        140        150        160        170        180 
AKATKDLRFL NSTKGTAVLL EVCFVDRKED ANAIHKSGMY DKLGIAIAEG LTGKTVAAKN 

       190        200        210        220        230        240 
PNRHSGAVVD SVPMLSKMDF KSSPIKMYKA GSSLLVYEHN KYWYKAYIND KLCYIYKSFC 

       250        260        270        280        290        300 
ISNGKKDAKG RIKVRIKSAK DLRIPVWNNT KLNSGKIKWY SPGTKLSWYD NKKGYLELWY 

       310 
EKDGWYYTAN YFLK

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References

[1]	"Genome and proteome of Listeria monocytogenes phage PSA: an unusual case for programmed + 1 translational frameshifting in structural protein synthesis." Zimmer M., Sattelberger E., Inman R.B., Calendar R., Loessner M.J. Mol. Microbiol. 50:303-317(2003) [PubMed: 14507382] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"The crystal structure of the bacteriophage PSA endolysin reveals a unique fold responsible for specific recognition of Listeria cell walls." Korndorfer I.P., Danzer J., Schmelcher M., Zimmer M., Skerra A., Loessner M.J. J. Mol. Biol. 364:678-689(2006) [PubMed: 17010991] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) IN COMPLEX WITH ZINC.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AJ312240 Genomic DNA. Translation: CAC85577.1.

RefSeq

NP_511002.1. NC_003291.2.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1XOV	X-ray	1.80	A	1-314	[»]

ProteinModelPortal

Q8W5Y8.

SMR

Q8W5Y8. Positions 1-314.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

1260365.

GenomeReviews

Gene locus 2389p22 in contig AJ312240_GR.

Phylogenomic databases

ProtClustDB

CLSP2491852.

Family and domain databases

InterPro

IPR002508. CW_Hdrlase/autolysin_cat.
[Graphical view]

Gene3D

G3DSA:3.40.630.40. Cell_wall_OHase/autolysin_cat. 1 hit.

Pfam

PF01520. Amidase_3. 1 hit.
[Graphical view]

SMART

SM00646. Ami_3. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q8W5Y8_9CAUD

Accession

Primary (citable) accession number: Q8W5Y8

Entry history

Integrated into UniProtKB/TrEMBL:	March 1, 2002
Last sequence update:	March 1, 2002
Last modified:	February 8, 2011
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)