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Q8W3D9

- PORB_ORYSJ

UniProt

Q8W3D9 - PORB_ORYSJ

Protein

Protochlorophyllide reductase B, chloroplastic

Gene

PORB

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 85 (01 Oct 2014)
      Sequence version 1 (01 Mar 2002)
      Previous versions | rss
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    Functioni

    Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide).

    Catalytic activityi

    Chlorophyllide a + NADP+ = protochlorophyllide + NADPH.

    Pathwayi

    GO - Molecular functioni

    1. protochlorophyllide reductase activity Source: UniProtKB-EC

    GO - Biological processi

    1. chlorophyll biosynthetic process Source: UniProtKB-UniPathway
    2. photosynthesis Source: UniProtKB-KW

    Keywords - Molecular functioni

    Oxidoreductase

    Keywords - Biological processi

    Chlorophyll biosynthesis, Photosynthesis

    Keywords - Ligandi

    NADP

    Enzyme and pathway databases

    UniPathwayiUPA00668.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protochlorophyllide reductase B, chloroplastic (EC:1.3.1.33)
    Short name:
    PCR B
    Alternative name(s):
    NADPH-protochlorophyllide oxidoreductase B
    Short name:
    POR B
    Gene namesi
    Name:PORB
    Ordered Locus Names:Os10g0496900, LOC_Os10g35370
    ORF Names:OSJNBa0017E08.8
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 10

    Organism-specific databases

    GrameneiQ8W3D9.

    Subcellular locationi

    Plastidchloroplast By similarity

    GO - Cellular componenti

    1. chloroplast Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini? – 402Protochlorophyllide reductase B, chloroplasticPRO_0000376077
    Transit peptidei1 – ?ChloroplastSequence Analysis

    Proteomic databases

    PaxDbiQ8W3D9.
    PRIDEiQ8W3D9.

    Interactioni

    Protein-protein interaction databases

    STRINGi39947.LOC_Os10g35370.1.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8W3D9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    eggNOGiCOG1028.
    KOiK00218.
    OMAiKGSYTIV.

    Family and domain databases

    Gene3Di3.40.50.720. 2 hits.
    InterProiIPR002198. DH_sc/Rdtase_SDR.
    IPR002347. Glc/ribitol_DH.
    IPR016040. NAD(P)-bd_dom.
    IPR005979. Prochl_reduct.
    [Graphical view]
    PfamiPF00106. adh_short. 1 hit.
    [Graphical view]
    PRINTSiPR00081. GDHRDH.
    TIGRFAMsiTIGR01289. LPOR. 1 hit.

    Sequences (2)i

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q8W3D9-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MALQAATTTS FLPSALSARK EGAVKDSAFL GVRLGDGLKL ETSALGLRTK    50
    RVSTSSVAIR AQASAAVSSP TVTPASPSGK QTLRKGTAVI TGASSGLGLA 100
    TAKALAETGR WHVVMGCRDF LKASRAAKAA GMEKGSYTIV HLDLASLDSV 150
    RQFVANVRRL EMPVDVVVCN AAVYQPTAKQ PSFTADGFEM SVGVNHLGHF 200
    LLARELLADL TSSDYPSKRL IIVGSITGNT NTLAGNVPPK ANLGDLRGLA 250
    SGLDGVSSSA MIDGGEFDGA KAYKDSKVCN MLTMQEFHRR YHGETGVTFA 300
    SLYPGCIATT GLFREHVPLF RLLFPPFQKY ITKGYVSEEE AGKRLAQVVS 350
    DPSLTKSGVY WSWNNNSASF ENQLSEEASD PEKAKKVWEL SEKLVGLADH 400
    DQ 402

    Note: Derived from EST data. No experimental confirmation available.

    Length:402
    Mass (Da):42,766
    Last modified:March 1, 2002 - v1
    Checksum:i749869F7316DFAAA
    GO
    Isoform 2 (identifier: Q8W3D9-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         1-114: Missing.

    Show »
    Length:288
    Mass (Da):31,377
    Checksum:i9D0C3CCC97655D85
    GO

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei1 – 114114Missing in isoform 2. 1 PublicationVSP_037403Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC068923 Genomic DNA. Translation: AAL58280.1.
    DP000086 Genomic DNA. Translation: AAP54438.1.
    DP000086 Genomic DNA. Translation: ABB47824.1.
    AP008216 Genomic DNA. Translation: BAF26869.1.
    AK068143 mRNA. Translation: BAG90777.1.
    RefSeqiNP_001064955.1. NM_001071490.1. [Q8W3D9-2]
    UniGeneiOs.88103.

    Genome annotation databases

    GeneIDi4349004.
    KEGGiosa:4349004.

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC068923 Genomic DNA. Translation: AAL58280.1 .
    DP000086 Genomic DNA. Translation: AAP54438.1 .
    DP000086 Genomic DNA. Translation: ABB47824.1 .
    AP008216 Genomic DNA. Translation: BAF26869.1 .
    AK068143 mRNA. Translation: BAG90777.1 .
    RefSeqi NP_001064955.1. NM_001071490.1. [Q8W3D9-2 ]
    UniGenei Os.88103.

    3D structure databases

    ProteinModelPortali Q8W3D9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 39947.LOC_Os10g35370.1.

    Proteomic databases

    PaxDbi Q8W3D9.
    PRIDEi Q8W3D9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 4349004.
    KEGGi osa:4349004.

    Organism-specific databases

    Gramenei Q8W3D9.

    Phylogenomic databases

    eggNOGi COG1028.
    KOi K00218.
    OMAi KGSYTIV.

    Enzyme and pathway databases

    UniPathwayi UPA00668 .

    Family and domain databases

    Gene3Di 3.40.50.720. 2 hits.
    InterProi IPR002198. DH_sc/Rdtase_SDR.
    IPR002347. Glc/ribitol_DH.
    IPR016040. NAD(P)-bd_dom.
    IPR005979. Prochl_reduct.
    [Graphical view ]
    Pfami PF00106. adh_short. 1 hit.
    [Graphical view ]
    PRINTSi PR00081. GDHRDH.
    TIGRFAMsi TIGR01289. LPOR. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "In-depth view of structure, activity, and evolution of rice chromosome 10."
      Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H.
      , Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.
      Science 300:1566-1569(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    4. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiPORB_ORYSJ
    AccessioniPrimary (citable) accession number: Q8W3D9
    Secondary accession number(s): Q337H5, Q7XD32
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 26, 2009
    Last sequence update: March 1, 2002
    Last modified: October 1, 2014
    This is version 85 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3