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Protein

Probable anion transporter 3, chloroplastic

Gene

PHT4;3

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probable anion transporter.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Ion transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Probable anion transporter 3, chloroplastic
Alternative name(s):
Phosphate transporter 4;3
Gene namesi
Name:PHT4;3
Ordered Locus Names:Os01g0852200, LOC_Os01g63290
ORF Names:P0529E05.4-1, P0529E05.4-2, P0529H11.39-1, P0529H11.39-2
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei100 – 12021HelicalSequence analysisAdd
BLAST
Transmembranei138 – 15821HelicalSequence analysisAdd
BLAST
Transmembranei166 – 18621HelicalSequence analysisAdd
BLAST
Transmembranei188 – 20821HelicalSequence analysisAdd
BLAST
Transmembranei229 – 24921HelicalSequence analysisAdd
BLAST
Transmembranei253 – 27321HelicalSequence analysisAdd
BLAST
Transmembranei326 – 34621HelicalSequence analysisAdd
BLAST
Transmembranei362 – 38221HelicalSequence analysisAdd
BLAST
Transmembranei403 – 42321HelicalSequence analysisAdd
BLAST
Transmembranei424 – 44421HelicalSequence analysisAdd
BLAST
Transmembranei460 – 48021HelicalSequence analysisAdd
BLAST
Transmembranei488 – 50821HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Membrane, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 7676ChloroplastSequence analysisAdd
BLAST
Chaini77 – 519443Probable anion transporter 3, chloroplasticPRO_0000383101Add
BLAST

Proteomic databases

PaxDbiQ8W0H5.

Expressioni

Gene expression databases

ExpressionAtlasiQ8W0H5. baseline and differential.
GenevisibleiQ8W0H5. OS.

Interactioni

Protein-protein interaction databases

IntActiQ8W0H5. 1 interaction.
STRINGi39947.LOC_Os01g63290.1.

Structurei

3D structure databases

ProteinModelPortaliQ8W0H5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transit peptide, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG2532. Eukaryota.
ENOG410XPWC. LUCA.
HOGENOMiHOG000230811.
InParanoidiQ8W0H5.
OMAiSCSDARR.

Family and domain databases

InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q8W0H5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAPPGQLLPL ARSLLPLSAP PFVSGRRRRL PTLVLGRALP PPTWLPHGRL
60 70 80 90 100
SPAHPLPFAP PRRLSRPPPP ATSLPGASPG GGAEAQAVLA EFVTSERVKV
110 120 130 140 150
AAMLGLALAL CNADRVVMSV AIVPLSQAYG WTPSFAGVVQ SSFLWGYLVS
160 170 180 190 200
PIIGGALVDY YGGKRVMAYG VALWSLATFL SPWAAARSLW LFLSTRVLLG
210 220 230 240 250
MAEGVALPSM NNMVLRWFPR TERSSAVGIA MAGFQLGNTI GLLLSPIIMS
260 270 280 290 300
RAGIFGPFVI FGLFGFLWVL VWISAISGTP GENAQISAHE LDYITRGQKL
310 320 330 340 350
VKTQSGGERL RKVPPFSKLL SKWPTWALIS ANAMHSWGYF VILSWMPVYF
360 370 380 390 400
KTIYHVNLRE AAWFSALPWV MMAVLGYVAG VVSDRLIQNG TSITLTRKIM
410 420 430 440 450
QTIGFVGPGV ALLGLNAAKS PVIASAWLTI AVGLKSFGHS GFLVNLQEIA
460 470 480 490 500
PQYAGVLHGM SNTAGTFAAI LGTVGAGFFV DRMGSFRGFL ILTSLLYFSS
510
TLFWDIFATG ERVDFDGTG
Length:519
Mass (Da):55,704
Last modified:March 1, 2002 - v1
Checksum:i8F550577311CBC35
GO
Isoform 2 (identifier: Q8W0H5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-166: Missing.

Note: No experimental confirmation available.
Show »
Length:353
Mass (Da):38,354
Checksum:i39A53A4FF2B41B3B
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 166166Missing in isoform 2. 1 PublicationVSP_037958Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003279 Genomic DNA. Translation: BAB84388.1.
AP003279 Genomic DNA. Translation: BAD81937.1.
AP004072 Genomic DNA. Translation: BAB92858.1.
AP004072 Genomic DNA. Translation: BAD82655.1.
AP008207 Genomic DNA. Translation: BAF06740.2.
AP014957 Genomic DNA. Translation: BAS75257.1.
AK063954 mRNA. Translation: BAG88934.1.
AK102621 mRNA. Translation: BAG95643.1.
RefSeqiXP_015620915.1. XM_015765429.1. [Q8W0H5-1]
UniGeneiOs.17497.

Genome annotation databases

EnsemblPlantsiOS01T0852200-03; OS01T0852200-03; OS01G0852200. [Q8W0H5-1]
GeneIDi4324813.
KEGGiosa:4324813.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP003279 Genomic DNA. Translation: BAB84388.1.
AP003279 Genomic DNA. Translation: BAD81937.1.
AP004072 Genomic DNA. Translation: BAB92858.1.
AP004072 Genomic DNA. Translation: BAD82655.1.
AP008207 Genomic DNA. Translation: BAF06740.2.
AP014957 Genomic DNA. Translation: BAS75257.1.
AK063954 mRNA. Translation: BAG88934.1.
AK102621 mRNA. Translation: BAG95643.1.
RefSeqiXP_015620915.1. XM_015765429.1. [Q8W0H5-1]
UniGeneiOs.17497.

3D structure databases

ProteinModelPortaliQ8W0H5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ8W0H5. 1 interaction.
STRINGi39947.LOC_Os01g63290.1.

Proteomic databases

PaxDbiQ8W0H5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS01T0852200-03; OS01T0852200-03; OS01G0852200. [Q8W0H5-1]
GeneIDi4324813.
KEGGiosa:4324813.

Phylogenomic databases

eggNOGiKOG2532. Eukaryota.
ENOG410XPWC. LUCA.
HOGENOMiHOG000230811.
InParanoidiQ8W0H5.
OMAiSCSDARR.

Gene expression databases

ExpressionAtlasiQ8W0H5. baseline and differential.
GenevisibleiQ8W0H5. OS.

Family and domain databases

InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The genome sequence and structure of rice chromosome 1."
    Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
    , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
    Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  4. Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  5. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Strain: cv. Nipponbare.
  6. "Differential expression and phylogenetic analysis suggest specialization of plastid-localized members of the PHT4 phosphate transporter family for photosynthetic and heterotrophic tissues."
    Guo B., Irigoyen S., Fowler T.B., Versaw W.K.
    Plant Signal. Behav. 3:784-790(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiPHT43_ORYSJ
AccessioniPrimary (citable) accession number: Q8W0H5
Secondary accession number(s): A0A0N7KE28, Q0JHN8, Q5N7A9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 1, 2009
Last sequence update: March 1, 2002
Last modified: June 8, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.