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Q8VZR2

- ASD2_ARATH

UniProt

Q8VZR2 - ASD2_ARATH

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Protein

Alpha-L-arabinofuranosidase 2

Gene
ASD2, ARAF2, At5g26120, T1N24.13
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

May be involved in the coordinated dissolution of the cell wall matrix during abscission and in the secondary cell wall formation in xylem vessels.1 Publication

Catalytic activityi

Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides.

GO - Molecular functioni

  1. alpha-L-arabinofuranosidase activity Source: UniProtKB-EC

GO - Biological processi

  1. L-arabinose metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Enzyme and pathway databases

BioCyciARA:AT5G26120-MONOMER.

Protein family/group databases

CAZyiGH51. Glycoside Hydrolase Family 51.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-L-arabinofuranosidase 2 (EC:3.2.1.55)
Short name:
AtASD2
Alternative name(s):
Beta-D-xylosidase (EC:3.2.1.-)
Gene namesi
Name:ASD2
Synonyms:ARAF2
Ordered Locus Names:At5g26120
ORF Names:T1N24.13
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 5

Organism-specific databases

TAIRiAT5G26120.

Subcellular locationi

GO - Cellular componenti

  1. proteinaceous extracellular matrix Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Extracellular matrix, Secreted

Pathology & Biotechi

Disruption phenotypei

No visible phenotype, even in asd1 and asd2 double mutant.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424 Reviewed predictionAdd
BLAST
Chaini25 – 674650Alpha-L-arabinofuranosidase 2PRO_0000384372Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi48 – 481N-linked (GlcNAc...) Reviewed prediction
Glycosylationi180 – 1801N-linked (GlcNAc...) Reviewed prediction
Glycosylationi199 – 1991N-linked (GlcNAc...) Reviewed prediction
Glycosylationi210 – 2101N-linked (GlcNAc...) Reviewed prediction
Glycosylationi361 – 3611N-linked (GlcNAc...) Reviewed prediction
Glycosylationi522 – 5221N-linked (GlcNAc...) Reviewed prediction
Glycosylationi548 – 5481N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ8VZR2.
PRIDEiQ8VZR2.

Expressioni

Tissue specificityi

High expression in flowers, siliques and stems. Observed in the vasculature of older root tissue, at the tip of anthers and in the petal blade of fully developed flowers, in floral abscission zones and in silique replum tissue. Expressed in the cambium and phloem, but not in the xylem or in the vascular system of floral tissues.2 Publications

Inductioni

Not induced by hormones or during leaf senescence.1 Publication

Gene expression databases

GenevestigatoriQ8VZR2.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT5G26120.1-P.

Structurei

3D structure databases

ProteinModelPortaliQ8VZR2.
SMRiQ8VZR2. Positions 228-650.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG3534.
HOGENOMiHOG000115340.
InParanoidiQ8VZR2.
KOiK01209.
OMAiHNDQVET.
PhylomeDBiQ8VZR2.

Family and domain databases

Gene3Di2.60.120.260. 1 hit.
InterProiIPR010720. Alpha-L-AF_C.
IPR008979. Galactose-bd-like.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamiPF06964. Alpha-L-AF_C. 1 hit.
[Graphical view]
SMARTiSM00813. Alpha-L-AF_C. 1 hit.
[Graphical view]
SUPFAMiSSF49785. SSF49785. 1 hit.
SSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8VZR2-1 [UniParc]FASTAAdd to Basket

« Hide

MDMETSWRFL RSVCLLSFIL GSFSVYQTLC LVDAQEDAIV TLQVDASNVT    50
RRPIPETLFG IFFEEINHAG AGGLWAELVS NRGFEAGGQI IPSNIWPWSI 100
IGDESSIYVV TDRSSCFERN KIALRMEVLC DSNSCPLGGV GVYNPGYWGM 150
NIEEGKKYKV VLYVRSTGDI DVSVSFTSSN GSVTLASENI IALASDLLNW 200
TKKEMLLEAN GTDNGARLQF TTTKKGSIWF DQVSAMPMDT YKGHGFRNDL 250
FQMMVDLKPR FIRFPGGCFV EGDWLGNAFR WKETVRAWEE RPGHYGDVWK 300
YWTDDGLGHF EFFQLAEDLG ASPIWVFNNG ISHNDQVETK NVMPFVQEAI 350
DGIEFARGDS NSTWGSVRAA MGHPEPFELK YVAVGNEDCF KSYYRGNYLE 400
FYNAIKKAYP DIKIISNCDA SAKPLDHPAD YFDYHIYTLA RDLFSKSHDF 450
DNTPRNGPKA FVSEYAVNKA DAKNGNLLAA LGEAAFLLGL EKNSDIVEMV 500
SYAPLFVNTN DRRWIPDAIV FNSSHLYGTP SYWVQHFFTE SSGATLLNST 550
LKGKTSSVEA SAISFQTNGK DYIQIKAVNF GEQSVNLKVA VTGLMAKFYG 600
SKKKVLTSAS VMDENSFSNP NMIVPQESLL EMTEQEDLMF VLPPHSFSSF 650
DLLTESENVI KMPISDSYKK TSTM 674
Length:674
Mass (Da):75,439
Last modified:March 1, 2002 - v1
Checksum:iC9FD37B9F397890B
GO

Sequence cautioni

The sequence AAD40132.1 differs from that shown. Reason: Erroneous gene model prediction.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY243510 mRNA. Translation: AAO92262.1.
AF149413 Genomic DNA. Translation: AAD40132.1. Sequence problems.
CP002688 Genomic DNA. Translation: AED93527.1.
AY063925 mRNA. Translation: AAL36281.1.
BT006062 mRNA. Translation: AAP04047.1.
RefSeqiNP_197984.2. NM_122513.3.
UniGeneiAt.27144.

Genome annotation databases

EnsemblPlantsiAT5G26120.1; AT5G26120.1; AT5G26120.
GeneIDi832681.
KEGGiath:AT5G26120.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY243510 mRNA. Translation: AAO92262.1 .
AF149413 Genomic DNA. Translation: AAD40132.1 . Sequence problems.
CP002688 Genomic DNA. Translation: AED93527.1 .
AY063925 mRNA. Translation: AAL36281.1 .
BT006062 mRNA. Translation: AAP04047.1 .
RefSeqi NP_197984.2. NM_122513.3.
UniGenei At.27144.

3D structure databases

ProteinModelPortali Q8VZR2.
SMRi Q8VZR2. Positions 228-650.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3702.AT5G26120.1-P.

Protein family/group databases

CAZyi GH51. Glycoside Hydrolase Family 51.

Proteomic databases

PaxDbi Q8VZR2.
PRIDEi Q8VZR2.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT5G26120.1 ; AT5G26120.1 ; AT5G26120 .
GeneIDi 832681.
KEGGi ath:AT5G26120.

Organism-specific databases

TAIRi AT5G26120.

Phylogenomic databases

eggNOGi COG3534.
HOGENOMi HOG000115340.
InParanoidi Q8VZR2.
KOi K01209.
OMAi HNDQVET.
PhylomeDBi Q8VZR2.

Enzyme and pathway databases

BioCyci ARA:AT5G26120-MONOMER.

Gene expression databases

Genevestigatori Q8VZR2.

Family and domain databases

Gene3Di 2.60.120.260. 1 hit.
InterProi IPR010720. Alpha-L-AF_C.
IPR008979. Galactose-bd-like.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
Pfami PF06964. Alpha-L-AF_C. 1 hit.
[Graphical view ]
SMARTi SM00813. Alpha-L-AF_C. 1 hit.
[Graphical view ]
SUPFAMi SSF49785. SSF49785. 1 hit.
SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Two alpha-L-arabinofuranosidase genes in Arabidopsis thaliana are differentially expressed during vegetative growth and flower development."
    Fulton L.M., Cobbett C.S.
    J. Exp. Bot. 54:2467-2477(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, INDUCTION BY HORMONES.
    Strain: cv. Columbia.
  2. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
    Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
    , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
    Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  5. "Cell wall modifications in Arabidopsis plants with altered alpha-L-arabinofuranosidase activity."
    Chavez Montes R.A., Ranocha P., Martinez Y., Minic Z., Jouanin L., Marquis M., Saulnier L., Fulton L.M., Cobbett C.S., Bitton F., Renou J.-P., Jauneau A., Goffner D.
    Plant Physiol. 147:63-77(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, TISSUE SPECIFICITY, DISRUPTION PHENOTYPE.

Entry informationi

Entry nameiASD2_ARATH
AccessioniPrimary (citable) accession number: Q8VZR2
Secondary accession number(s): Q9XH04
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 22, 2009
Last sequence update: March 1, 2002
Last modified: June 11, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi