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Q8VZR2

- ASD2_ARATH

UniProt

Q8VZR2 - ASD2_ARATH

Protein

Alpha-L-arabinofuranosidase 2

Gene

ASD2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 80 (01 Oct 2014)
      Sequence version 1 (01 Mar 2002)
      Previous versions | rss
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    Functioni

    May be involved in the coordinated dissolution of the cell wall matrix during abscission and in the secondary cell wall formation in xylem vessels.1 Publication

    Catalytic activityi

    Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides.

    GO - Molecular functioni

    1. alpha-L-arabinofuranosidase activity Source: UniProtKB-EC

    GO - Biological processi

    1. L-arabinose metabolic process Source: InterPro

    Keywords - Molecular functioni

    Hydrolase

    Enzyme and pathway databases

    BioCyciARA:AT5G26120-MONOMER.

    Protein family/group databases

    CAZyiGH51. Glycoside Hydrolase Family 51.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-L-arabinofuranosidase 2 (EC:3.2.1.55)
    Short name:
    AtASD2
    Alternative name(s):
    Beta-D-xylosidase (EC:3.2.1.-)
    Gene namesi
    Name:ASD2
    Synonyms:ARAF2
    Ordered Locus Names:At5g26120
    ORF Names:T1N24.13
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 5

    Organism-specific databases

    TAIRiAT5G26120.

    Subcellular locationi

    GO - Cellular componenti

    1. proteinaceous extracellular matrix Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Extracellular matrix, Secreted

    Pathology & Biotechi

    Disruption phenotypei

    No visible phenotype, even in asd1 and asd2 double mutant.1 Publication

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2424Sequence AnalysisAdd
    BLAST
    Chaini25 – 674650Alpha-L-arabinofuranosidase 2PRO_0000384372Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi48 – 481N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi180 – 1801N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi199 – 1991N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi210 – 2101N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi361 – 3611N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi522 – 5221N-linked (GlcNAc...)Sequence Analysis
    Glycosylationi548 – 5481N-linked (GlcNAc...)Sequence Analysis

    Keywords - PTMi

    Glycoprotein

    Proteomic databases

    PaxDbiQ8VZR2.
    PRIDEiQ8VZR2.

    Expressioni

    Tissue specificityi

    High expression in flowers, siliques and stems. Observed in the vasculature of older root tissue, at the tip of anthers and in the petal blade of fully developed flowers, in floral abscission zones and in silique replum tissue. Expressed in the cambium and phloem, but not in the xylem or in the vascular system of floral tissues.2 Publications

    Inductioni

    Not induced by hormones or during leaf senescence.1 Publication

    Gene expression databases

    GenevestigatoriQ8VZR2.

    Interactioni

    Protein-protein interaction databases

    STRINGi3702.AT5G26120.1-P.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8VZR2.
    SMRiQ8VZR2. Positions 228-650.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 51 family.Curated

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG3534.
    HOGENOMiHOG000115340.
    InParanoidiQ8VZR2.
    KOiK01209.
    OMAiHNDQVET.
    PhylomeDBiQ8VZR2.

    Family and domain databases

    Gene3Di2.60.120.260. 1 hit.
    InterProiIPR010720. Alpha-L-AF_C.
    IPR008979. Galactose-bd-like.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PfamiPF06964. Alpha-L-AF_C. 1 hit.
    [Graphical view]
    SMARTiSM00813. Alpha-L-AF_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF49785. SSF49785. 1 hit.
    SSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q8VZR2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDMETSWRFL RSVCLLSFIL GSFSVYQTLC LVDAQEDAIV TLQVDASNVT    50
    RRPIPETLFG IFFEEINHAG AGGLWAELVS NRGFEAGGQI IPSNIWPWSI 100
    IGDESSIYVV TDRSSCFERN KIALRMEVLC DSNSCPLGGV GVYNPGYWGM 150
    NIEEGKKYKV VLYVRSTGDI DVSVSFTSSN GSVTLASENI IALASDLLNW 200
    TKKEMLLEAN GTDNGARLQF TTTKKGSIWF DQVSAMPMDT YKGHGFRNDL 250
    FQMMVDLKPR FIRFPGGCFV EGDWLGNAFR WKETVRAWEE RPGHYGDVWK 300
    YWTDDGLGHF EFFQLAEDLG ASPIWVFNNG ISHNDQVETK NVMPFVQEAI 350
    DGIEFARGDS NSTWGSVRAA MGHPEPFELK YVAVGNEDCF KSYYRGNYLE 400
    FYNAIKKAYP DIKIISNCDA SAKPLDHPAD YFDYHIYTLA RDLFSKSHDF 450
    DNTPRNGPKA FVSEYAVNKA DAKNGNLLAA LGEAAFLLGL EKNSDIVEMV 500
    SYAPLFVNTN DRRWIPDAIV FNSSHLYGTP SYWVQHFFTE SSGATLLNST 550
    LKGKTSSVEA SAISFQTNGK DYIQIKAVNF GEQSVNLKVA VTGLMAKFYG 600
    SKKKVLTSAS VMDENSFSNP NMIVPQESLL EMTEQEDLMF VLPPHSFSSF 650
    DLLTESENVI KMPISDSYKK TSTM 674
    Length:674
    Mass (Da):75,439
    Last modified:March 1, 2002 - v1
    Checksum:iC9FD37B9F397890B
    GO

    Sequence cautioni

    The sequence AAD40132.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY243510 mRNA. Translation: AAO92262.1.
    AF149413 Genomic DNA. Translation: AAD40132.1. Sequence problems.
    CP002688 Genomic DNA. Translation: AED93527.1.
    AY063925 mRNA. Translation: AAL36281.1.
    BT006062 mRNA. Translation: AAP04047.1.
    RefSeqiNP_197984.2. NM_122513.3.
    UniGeneiAt.27144.

    Genome annotation databases

    EnsemblPlantsiAT5G26120.1; AT5G26120.1; AT5G26120.
    GeneIDi832681.
    KEGGiath:AT5G26120.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY243510 mRNA. Translation: AAO92262.1 .
    AF149413 Genomic DNA. Translation: AAD40132.1 . Sequence problems.
    CP002688 Genomic DNA. Translation: AED93527.1 .
    AY063925 mRNA. Translation: AAL36281.1 .
    BT006062 mRNA. Translation: AAP04047.1 .
    RefSeqi NP_197984.2. NM_122513.3.
    UniGenei At.27144.

    3D structure databases

    ProteinModelPortali Q8VZR2.
    SMRi Q8VZR2. Positions 228-650.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3702.AT5G26120.1-P.

    Protein family/group databases

    CAZyi GH51. Glycoside Hydrolase Family 51.

    Proteomic databases

    PaxDbi Q8VZR2.
    PRIDEi Q8VZR2.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT5G26120.1 ; AT5G26120.1 ; AT5G26120 .
    GeneIDi 832681.
    KEGGi ath:AT5G26120.

    Organism-specific databases

    TAIRi AT5G26120.

    Phylogenomic databases

    eggNOGi COG3534.
    HOGENOMi HOG000115340.
    InParanoidi Q8VZR2.
    KOi K01209.
    OMAi HNDQVET.
    PhylomeDBi Q8VZR2.

    Enzyme and pathway databases

    BioCyci ARA:AT5G26120-MONOMER.

    Gene expression databases

    Genevestigatori Q8VZR2.

    Family and domain databases

    Gene3Di 2.60.120.260. 1 hit.
    InterProi IPR010720. Alpha-L-AF_C.
    IPR008979. Galactose-bd-like.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    Pfami PF06964. Alpha-L-AF_C. 1 hit.
    [Graphical view ]
    SMARTi SM00813. Alpha-L-AF_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49785. SSF49785. 1 hit.
    SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Two alpha-L-arabinofuranosidase genes in Arabidopsis thaliana are differentially expressed during vegetative growth and flower development."
      Fulton L.M., Cobbett C.S.
      J. Exp. Bot. 54:2467-2477(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, INDUCTION BY HORMONES.
      Strain: cv. Columbia.
    2. "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana."
      Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.
      , Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.
      Nature 408:823-826(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    3. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    5. "Cell wall modifications in Arabidopsis plants with altered alpha-L-arabinofuranosidase activity."
      Chavez Montes R.A., Ranocha P., Martinez Y., Minic Z., Jouanin L., Marquis M., Saulnier L., Fulton L.M., Cobbett C.S., Bitton F., Renou J.-P., Jauneau A., Goffner D.
      Plant Physiol. 147:63-77(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: FUNCTION, TISSUE SPECIFICITY, DISRUPTION PHENOTYPE.

    Entry informationi

    Entry nameiASD2_ARATH
    AccessioniPrimary (citable) accession number: Q8VZR2
    Secondary accession number(s): Q9XH04
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: September 22, 2009
    Last sequence update: March 1, 2002
    Last modified: October 1, 2014
    This is version 80 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3