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Protein

60S ribosomal protein L10a-1

Gene

RPL10AA

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L10a-1
Gene namesi
Name:RPL10AA
Ordered Locus Names:At1g08360
ORF Names:T27G7.6
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G08360.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
  • cytosolic large ribosomal subunit Source: TAIR
  • cytosolic ribosome Source: TAIR
  • plasma membrane Source: TAIR
  • plasmodesma Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001258321 – 21660S ribosomal protein L10a-1Add BLAST216

Proteomic databases

PaxDbiQ8VZB9.
PRIDEiQ8VZB9.

Expressioni

Gene expression databases

GenevisibleiQ8VZB9. AT.

Interactioni

Subunit structurei

Interacts with the GTPase NUG2.1 Publication

Protein-protein interaction databases

BioGridi22597. 2 interactors.
STRINGi3702.AT1G08360.1.

Structurei

3D structure databases

ProteinModelPortaliQ8VZB9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L1P family.Curated

Phylogenomic databases

eggNOGiKOG1570. Eukaryota.
COG0081. LUCA.
HOGENOMiHOG000207014.
InParanoidiQ8VZB9.
KOiK02865.
OMAiKELFINI.
OrthoDBiEOG09360N1C.
PhylomeDBiQ8VZB9.

Family and domain databases

CDDicd00403. Ribosomal_L1. 1 hit.
Gene3Di3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
InterProiIPR002143. Ribosomal_L1.
IPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
[Graphical view]
PfamiPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFiPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMiSSF56808. SSF56808. 1 hit.
PROSITEiPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8VZB9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKLQSEAVR EAITTITGKS EAKKRNFVET IELQIGLKNY DPQKDKRFSG
60 70 80 90 100
SVKLPHIPRP KMKICMLGDA QHVEEAEKMG LENMDVESLK KLNKNKKLVK
110 120 130 140 150
KLAKKYHAFL ASESVIKQIP RLLGPGLNKA GKFPTLVSHQ ESLESKVNET
160 170 180 190 200
KATVKFQLKK VLCMGVAVGN LSMEEKQIFQ NVQMSVNFLV SLLKKNWQNV
210
RCLYLKSTMG PPQRIF
Length:216
Mass (Da):24,469
Last modified:March 1, 2002 - v1
Checksum:i4BB3993AC48E49D3
GO

Sequence cautioni

The sequence AAF22886 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006932 Genomic DNA. Translation: AAF22886.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE28281.1.
AY065077 mRNA. Translation: AAL38253.1.
AY114542 mRNA. Translation: AAM47861.1.
PIRiC86217.
RefSeqiNP_563813.2. NM_100709.5.
UniGeneiAt.24240.

Genome annotation databases

EnsemblPlantsiAT1G08360.1; AT1G08360.1; AT1G08360.
GeneIDi837356.
GrameneiAT1G08360.1; AT1G08360.1; AT1G08360.
KEGGiath:AT1G08360.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006932 Genomic DNA. Translation: AAF22886.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE28281.1.
AY065077 mRNA. Translation: AAL38253.1.
AY114542 mRNA. Translation: AAM47861.1.
PIRiC86217.
RefSeqiNP_563813.2. NM_100709.5.
UniGeneiAt.24240.

3D structure databases

ProteinModelPortaliQ8VZB9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi22597. 2 interactors.
STRINGi3702.AT1G08360.1.

Proteomic databases

PaxDbiQ8VZB9.
PRIDEiQ8VZB9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G08360.1; AT1G08360.1; AT1G08360.
GeneIDi837356.
GrameneiAT1G08360.1; AT1G08360.1; AT1G08360.
KEGGiath:AT1G08360.

Organism-specific databases

TAIRiAT1G08360.

Phylogenomic databases

eggNOGiKOG1570. Eukaryota.
COG0081. LUCA.
HOGENOMiHOG000207014.
InParanoidiQ8VZB9.
KOiK02865.
OMAiKELFINI.
OrthoDBiEOG09360N1C.
PhylomeDBiQ8VZB9.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiQ8VZB9.

Gene expression databases

GenevisibleiQ8VZB9. AT.

Family and domain databases

CDDicd00403. Ribosomal_L1. 1 hit.
Gene3Di3.30.190.20. 2 hits.
3.40.50.790. 1 hit.
InterProiIPR002143. Ribosomal_L1.
IPR023674. Ribosomal_L1-like.
IPR028364. Ribosomal_L1/biogenesis.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
[Graphical view]
PfamiPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFiPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMiSSF56808. SSF56808. 1 hit.
PROSITEiPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiR10A1_ARATH
AccessioniPrimary (citable) accession number: Q8VZB9
Secondary accession number(s): Q9SJF4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 27, 2003
Last sequence update: March 1, 2002
Last modified: November 30, 2016
This is version 114 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.