Reviewed, UniProtKB/Swiss-Prot Q8VZB9 (R10A1_ARATH)

Names and origin

Protein names

Recommended name:
    60S ribosomal protein L10a-1

Gene names

Name:	RPL10AA
Ordered Locus Names:	At1g08360
ORF Names:	T27G7.6

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	216 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities	Belongs to the ribosomal protein L1P family.
Sequence caution	The sequence AAF22886.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	RNA processing Inferred from electronic annotation. Source: InterPro translation Inferred from electronic annotation. Source: InterPro
Cellular component	cytosolic large ribosomal subunit Inferred from direct assay. Source: TAIR plasma membrane Inferred from direct assay. Source: TAIR
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 216	216	60S ribosomal protein L10a-1		PRO_0000125832

Sequences

	Sequence		Length	Mass (Da)
	Q8VZB9-1 [UniParc]. Last modified March 1, 2002. Version 1. Checksum: 4BB3993AC48E49D3	FASTA	216	24,469
	10 20 30 40 50 60 MSKLQSEAVR EAITTITGKS EAKKRNFVET IELQIGLKNY DPQKDKRFSG SVKLPHIPRP 70 80 90 100 110 120 KMKICMLGDA QHVEEAEKMG LENMDVESLK KLNKNKKLVK KLAKKYHAFL ASESVIKQIP 130 140 150 160 170 180 RLLGPGLNKA GKFPTLVSHQ ESLESKVNET KATVKFQLKK VLCMGVAVGN LSMEEKQIFQ 190 200 210 NVQMSVNFLV SLLKKNWQNV RCLYLKSTMG PPQRIF

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana." Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W. Nature 408:816-820(2000) [PubMed: 11130712] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[2]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[3]	"The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome." Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J. Plant Physiol. 127:398-415(2001) [PubMed: 11598216] [Abstract] Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AC006932 Genomic DNA. Translation: AAF22886.1. Sequence problems. AY065077 mRNA. Translation: AAL38253.1. AY114542 mRNA. Translation: AAM47861.1.
IPI	IPI00519555.
PIR	C86217.
RefSeq	NP_563813.2.
UniGene	At.24240 Rra.747
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q8VZB9.
Proteomic databases
PRIDE	Q8VZB9.
Genome annotation databases
GeneID	837356.
GenomeReviews	Gene locus AT1G08360 in contig CT485782_GR.
KEGG	ath:AT1G08360.
NMPDR	fig|3702.1.peg.1043.
Organism-specific databases
GeneFarm	156. 10.
TAIR	At1g08360.
Phylogenomic databases
HOGENOM	HBG316566.
InParanoid	Q8VZB9.
OMA	GKVYRVF.
Gene expression databases
ArrayExpress	Q8VZB9.
Genevestigator	Q8VZB9.
GermOnline	AT1G08360. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR002143. Ribosomal_L1. IPR016094. Ribosomal_L1_2-a/b-sand. [Graphical view]
Gene3D	G3DSA:3.30.190.20. Ribosomal_L1_2-a/b-sand. 1 hit.
Pfam	PF00687. Ribosomal_L1. 1 hit. [Graphical view]
PIRSF	PIRSF002155. Ribosomal_L1. 1 hit.
PROSITE	PS01199. RIBOSOMAL_L1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

R10A1_ARATH

Accession

Primary (citable) accession number: Q8VZB9
Secondary accession number(s): Q9SJF4

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 27, 2003
Last sequence update:	March 1, 2002
Last modified:	December 15, 2009
This is version 63 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)