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Q8VZB9 (R10A1_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified November 16, 2011. Version 80. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
60S ribosomal protein L10a-1
Gene names
Name:RPL10AA
Ordered Locus Names:At1g08360
ORF Names:T27G7.6
OrganismArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length216 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L1P family.

Sequence caution

The sequence AAF22886.1 differs from that shown. Reason: Erroneous gene model prediction.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 21621660S ribosomal protein L10a-1
PRO_0000125832

Sequences

Sequence LengthMass (Da)Tools
Q8VZB9 [UniParc].

Last modified March 1, 2002. Version 1.
Checksum: 4BB3993AC48E49D3

FASTA21624,469
        10         20         30         40         50         60 
MSKLQSEAVR EAITTITGKS EAKKRNFVET IELQIGLKNY DPQKDKRFSG SVKLPHIPRP 

        70         80         90        100        110        120 
KMKICMLGDA QHVEEAEKMG LENMDVESLK KLNKNKKLVK KLAKKYHAFL ASESVIKQIP 

       130        140        150        160        170        180 
RLLGPGLNKA GKFPTLVSHQ ESLESKVNET KATVKFQLKK VLCMGVAVGN LSMEEKQIFQ 

       190        200        210 
NVQMSVNFLV SLLKKNWQNV RCLYLKSTMG PPQRIF

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed: 11130712] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed: 14593172] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[4]"The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome."
Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J.
Plant Physiol. 127:398-415(2001) [PubMed: 11598216] [Abstract]
Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AC006932 Genomic DNA. Translation: AAF22886.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE28281.1.
AY065077 mRNA. Translation: AAL38253.1.
AY114542 mRNA. Translation: AAM47861.1.
IPIIPI00519555.
PIRC86217.
RefSeqNP_563813.2. NM_100709.4.
UniGeneAt.24240.

3D structure databases

ProteinModelPortalQ8VZB9.
SMRQ8VZB9. Positions 1-216.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ8VZB9.

Proteomic databases

PRIDEQ8VZB9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT1G08360.1; AT1G08360.1; AT1G08360.
GeneID837356.
GenomeReviewsGene locus AT1G08360 in contig CT485782_GR.
KEGGath:AT1G08360.
NMPDRfig|3702.1.peg.1043.

Organism-specific databases

GeneFarm156. 10.
TAIRAt1g08360.

Phylogenomic databases

eggNOGKOG1570.
GeneTreeEPGT00050000007654.
HOGENOMHBG316566.
InParanoidQ8VZB9.
OMAENMDVES.
PhylomeDBQ8VZB9.
ProtClustDBCLSN2687446.

Gene expression databases

ArrayExpressQ8VZB9.
GenevestigatorQ8VZB9.
GermOnlineAT1G08360. Arabidopsis thaliana.

Family and domain databases

InterProIPR002143. Ribosomal_L1.
IPR016094. Ribosomal_L1_2-a/b-sand.
IPR016095. Ribosomal_L1_3-a/b-sand.
IPR023673. Ribosomal_L1_CS.
IPR023674. Ribosomal_L1_SF.
[Graphical view]
Gene3DG3DSA:3.30.190.20. Ribosomal_L1_2-a/b-sand. 2 hits.
G3DSA:3.40.50.790. Ribosomal_L1_3-a/b-sand. 1 hit.
KOK02865.
PfamPF00687. Ribosomal_L1. 1 hit.
[Graphical view]
PIRSFPIRSF002155. Ribosomal_L1. 1 hit.
SUPFAMSSF56808. Ribosomal_L1. 1 hit.
PROSITEPS01199. RIBOSOMAL_L1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameR10A1_ARATH
AccessionPrimary (citable) accession number: Q8VZB9
Secondary accession number(s): Q9SJF4
Entry history
Integrated into UniProtKB/Swiss-Prot: January 27, 2003
Last sequence update: March 1, 2002
Last modified: November 16, 2011
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents