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Protein

60S ribosomal protein L30-2

Gene

RPL30B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L30-2
Gene namesi
Name:RPL30B
Ordered Locus Names:At1g77940
ORF Names:F28K19.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G77940.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: TAIR
  • cytosolic ribosome Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11211260S ribosomal protein L30-2PRO_0000244748Add
BLAST

Proteomic databases

PaxDbiQ8VZ19.
PRIDEiQ8VZ19.

Expressioni

Gene expression databases

ExpressionAtlasiQ8VZ19. baseline and differential.
GenevisibleiQ8VZ19. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G77940.1.

Structurei

3D structure databases

ProteinModelPortaliQ8VZ19.
SMRiQ8VZ19. Positions 6-107.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L30e family.Curated

Phylogenomic databases

eggNOGiKOG2988. Eukaryota.
COG1911. LUCA.
HOGENOMiHOG000055224.
InParanoidiQ8VZ19.
KOiK02908.
OMAiDIPVYEF.
OrthoDBiEOG09360TU0.
PhylomeDBiQ8VZ19.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR029064. L30e-like.
IPR000231. Ribosomal_L30e.
IPR022991. Ribosomal_L30e_CS.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
[Graphical view]
PANTHERiPTHR11449. PTHR11449. 1 hit.
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiPS00709. RIBOSOMAL_L30E_1. 1 hit.
PS00993. RIBOSOMAL_L30E_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8VZ19-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVTEKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRG SKGKLILIST
60 70 80 90 100
NCPPLRRSEI EYYAMLAKVG VHHYNGNNVD LGTACGKYFR VSCLSIVDPG
110
DSDIIKSIPG DQ
Length:112
Mass (Da):12,290
Last modified:March 1, 2002 - v1
Checksum:i46B1BB752A5D034B
GO

Sequence cautioni

The sequence AAF17698 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009243 Genomic DNA. Translation: AAF17698.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE36049.1.
AY065370 mRNA. Translation: AAL38811.1.
AY114036 mRNA. Translation: AAM45084.1.
BT004749 mRNA. Translation: AAO44015.1.
AY085881 mRNA. Translation: AAM63094.1.
RefSeqiNP_565164.1. NM_106443.4.
UniGeneiAt.16535.
At.67705.

Genome annotation databases

EnsemblPlantsiAT1G77940.1; AT1G77940.1; AT1G77940.
GeneIDi844129.
GrameneiAT1G77940.1; AT1G77940.1; AT1G77940.
KEGGiath:AT1G77940.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009243 Genomic DNA. Translation: AAF17698.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE36049.1.
AY065370 mRNA. Translation: AAL38811.1.
AY114036 mRNA. Translation: AAM45084.1.
BT004749 mRNA. Translation: AAO44015.1.
AY085881 mRNA. Translation: AAM63094.1.
RefSeqiNP_565164.1. NM_106443.4.
UniGeneiAt.16535.
At.67705.

3D structure databases

ProteinModelPortaliQ8VZ19.
SMRiQ8VZ19. Positions 6-107.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT1G77940.1.

Proteomic databases

PaxDbiQ8VZ19.
PRIDEiQ8VZ19.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G77940.1; AT1G77940.1; AT1G77940.
GeneIDi844129.
GrameneiAT1G77940.1; AT1G77940.1; AT1G77940.
KEGGiath:AT1G77940.

Organism-specific databases

TAIRiAT1G77940.

Phylogenomic databases

eggNOGiKOG2988. Eukaryota.
COG1911. LUCA.
HOGENOMiHOG000055224.
InParanoidiQ8VZ19.
KOiK02908.
OMAiDIPVYEF.
OrthoDBiEOG09360TU0.
PhylomeDBiQ8VZ19.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiQ8VZ19.

Gene expression databases

ExpressionAtlasiQ8VZ19. baseline and differential.
GenevisibleiQ8VZ19. AT.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR029064. L30e-like.
IPR000231. Ribosomal_L30e.
IPR022991. Ribosomal_L30e_CS.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
[Graphical view]
PANTHERiPTHR11449. PTHR11449. 1 hit.
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiPS00709. RIBOSOMAL_L30E_1. 1 hit.
PS00993. RIBOSOMAL_L30E_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL302_ARATH
AccessioniPrimary (citable) accession number: Q8VZ19
Secondary accession number(s): Q9SH07
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: March 1, 2002
Last modified: September 7, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.