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Protein

60S ribosomal protein L30-2

Gene

RPL30B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • cytoplasmic translation Source: GO_Central
  • mature ribosome assembly Source: CAFA

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L30-2
Gene namesi
Name:RPL30B
Ordered Locus Names:At1g77940
ORF Names:F28K19.15
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G77940.
TAIRilocus:2029401. AT1G77940.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: TAIR
  • cytosolic ribosome Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002447481 – 11260S ribosomal protein L30-2Add BLAST112

Proteomic databases

PaxDbiQ8VZ19.
PRIDEiQ8VZ19.

Expressioni

Gene expression databases

ExpressionAtlasiQ8VZ19. baseline and differential.
GenevisibleiQ8VZ19. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G77940.1.

Structurei

3D structure databases

ProteinModelPortaliQ8VZ19.
SMRiQ8VZ19.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG2988. Eukaryota.
COG1911. LUCA.
HOGENOMiHOG000055224.
InParanoidiQ8VZ19.
KOiK02908.
OMAiAKLVIIC.
OrthoDBiEOG09360TU0.
PhylomeDBiQ8VZ19.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiView protein in InterPro
IPR029064. L30e-like.
IPR022991. Ribosomal_L30e_CS.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
PfamiView protein in Pfam
PF01248. Ribosomal_L7Ae. 1 hit.
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiView protein in PROSITE
PS00709. RIBOSOMAL_L30E_1. 1 hit.
PS00993. RIBOSOMAL_L30E_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q8VZ19-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVTEKKTKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRG SKGKLILIST
60 70 80 90 100
NCPPLRRSEI EYYAMLAKVG VHHYNGNNVD LGTACGKYFR VSCLSIVDPG
110
DSDIIKSIPG DQ
Length:112
Mass (Da):12,290
Last modified:March 1, 2002 - v1
Checksum:i46B1BB752A5D034B
GO

Sequence cautioni

The sequence AAF17698 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC009243 Genomic DNA. Translation: AAF17698.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE36049.1.
AY065370 mRNA. Translation: AAL38811.1.
AY114036 mRNA. Translation: AAM45084.1.
BT004749 mRNA. Translation: AAO44015.1.
AY085881 mRNA. Translation: AAM63094.1.
RefSeqiNP_565164.1. NM_106443.5.
UniGeneiAt.16535.
At.67705.

Genome annotation databases

EnsemblPlantsiAT1G77940.1; AT1G77940.1; AT1G77940.
GeneIDi844129.
GrameneiAT1G77940.1; AT1G77940.1; AT1G77940.
KEGGiath:AT1G77940.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL302_ARATH
AccessioniPrimary (citable) accession number: Q8VZ19
Secondary accession number(s): Q9SH07
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: March 1, 2002
Last modified: July 5, 2017
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families