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Protein

Ethylene-responsive transcription factor 15

Gene

ERF15

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity).By similarity1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi85 – 14359AP2/ERFPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  • DNA binding Source: UniProtKB-KW
  • transcription factor activity, sequence-specific DNA binding Source: TAIR

GO - Biological processi

  • defense response Source: UniProtKB-KW
  • ethylene-activated signaling pathway Source: TAIR
  • response to chitin Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Ethylene signaling pathway, Plant defense, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ethylene-responsive transcription factor 15
Short name:
AtERF15
Alternative name(s):
Ethylene-responsive element-binding factor 15
Short name:
EREBP-15
Gene namesi
Name:ERF15
Synonyms:ERF-15, ERF093
Ordered Locus Names:At2g31230
ORF Names:F16D14.7
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G31230.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
  • nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 243243Ethylene-responsive transcription factor 15PRO_0000112551Add
BLAST

Proteomic databases

PaxDbiQ8VYM0.
PRIDEiQ8VYM0.

Expressioni

Inductioni

Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation.1 Publication

Gene expression databases

GenevisibleiQ8VYM0. AT.

Interactioni

Protein-protein interaction databases

BioGridi3028. 1 interaction.
STRINGi3702.AT2G31230.1.

Structurei

3D structure databases

ProteinModelPortaliQ8VYM0.
SMRiQ8VYM0. Positions 84-146.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi170 – 18617Nuclear localization signalSequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi185 – 21228Poly-SerAdd
BLAST

Sequence similaritiesi

Contains 1 AP2/ERF DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410J3V6. Eukaryota.
ENOG41124AA. LUCA.
HOGENOMiHOG000237624.
InParanoidiQ8VYM0.
OMAiMEYSQSS.
PhylomeDBiQ8VYM0.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8VYM0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEYSQSSMYS SPSSWSSSQE SLLWNESCFL DQSSEPQAFF CPNYDYSDDF
60 70 80 90 100
FSFESPEMMI KEEIQNGDVS NSEEEEKVGI DEERSYRGVR KRPWGKFAAE
110 120 130 140 150
IRDSTRNGIR VWLGTFDKAE EAALAYDQAA FATKGSLATL NFPVEVVRES
160 170 180 190 200
LKKMENVNLH DGGSPVMALK RKHSLRNRPR GKKRSSSSSS SSSNSSSCSS
210 220 230 240
SSSTSSTSRS SSKQSVVKQE SGTLVVFEDL GAEYLEQLLM SSC
Length:243
Mass (Da):27,056
Last modified:March 1, 2002 - v1
Checksum:iE270B124831B7BBB
GO

Sequence cautioni

The sequence AAD20668.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006593 Genomic DNA. Translation: AAD20668.1. Sequence problems.
CP002685 Genomic DNA. Translation: AEC08512.1.
AY070443 mRNA. Translation: AAL49846.1.
AY096563 mRNA. Translation: AAM20213.1.
PIRiB84718.
RefSeqiNP_850162.1. NM_179831.1.
UniGeneiAt.28356.

Genome annotation databases

EnsemblPlantsiAT2G31230.1; AT2G31230.1; AT2G31230.
GeneIDi817680.
GrameneiAT2G31230.1; AT2G31230.1; AT2G31230.
KEGGiath:AT2G31230.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC006593 Genomic DNA. Translation: AAD20668.1. Sequence problems.
CP002685 Genomic DNA. Translation: AEC08512.1.
AY070443 mRNA. Translation: AAL49846.1.
AY096563 mRNA. Translation: AAM20213.1.
PIRiB84718.
RefSeqiNP_850162.1. NM_179831.1.
UniGeneiAt.28356.

3D structure databases

ProteinModelPortaliQ8VYM0.
SMRiQ8VYM0. Positions 84-146.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi3028. 1 interaction.
STRINGi3702.AT2G31230.1.

Proteomic databases

PaxDbiQ8VYM0.
PRIDEiQ8VYM0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G31230.1; AT2G31230.1; AT2G31230.
GeneIDi817680.
GrameneiAT2G31230.1; AT2G31230.1; AT2G31230.
KEGGiath:AT2G31230.

Organism-specific databases

TAIRiAT2G31230.

Phylogenomic databases

eggNOGiENOG410J3V6. Eukaryota.
ENOG41124AA. LUCA.
HOGENOMiHOG000237624.
InParanoidiQ8VYM0.
OMAiMEYSQSS.
PhylomeDBiQ8VYM0.

Miscellaneous databases

PROiQ8VYM0.

Gene expression databases

GenevisibleiQ8VYM0. AT.

Family and domain databases

Gene3Di3.30.730.10. 1 hit.
InterProiIPR001471. AP2/ERF_dom.
IPR016177. DNA-bd_dom.
[Graphical view]
PfamiPF00847. AP2. 1 hit.
[Graphical view]
PRINTSiPR00367. ETHRSPELEMNT.
SMARTiSM00380. AP2. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS51032. AP2_ERF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Identification of Arabidopsis ethylene-responsive element binding factors with distinct induction kinetics after pathogen infection."
    Onate-Sanchez L., Singh K.B.
    Plant Physiol. 128:1313-1322(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, INDUCTION.
  5. "Genome-wide analysis of the ERF gene family in Arabidopsis and rice."
    Nakano T., Suzuki K., Fujimura T., Shinshi H.
    Plant Physiol. 140:411-432(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiERF93_ARATH
AccessioniPrimary (citable) accession number: Q8VYM0
Secondary accession number(s): Q9SJX3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 4, 2005
Last sequence update: March 1, 2002
Last modified: February 17, 2016
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.