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Protein

60S ribosomal protein L15-2

Gene

RPL15B

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L15-2
Gene namesi
Name:RPL15B
Ordered Locus Names:At4g17390
ORF Names:dl4730c, FCAALL.32
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G17390
TAIRilocus:2130923 AT4G17390

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002405181 – 20460S ribosomal protein L15-2Add BLAST204

Proteomic databases

PaxDbiQ8VYF1
PRIDEiQ8VYF1

PTM databases

iPTMnetiQ8VYF1

Expressioni

Gene expression databases

ExpressionAtlasiQ8VYF1 baseline and differential
GenevisibleiQ8VYF1 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT4G17390.1

Structurei

3D structure databases

ProteinModelPortaliQ8VYF1
SMRiQ8VYF1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1678 Eukaryota
COG1632 LUCA
HOGENOMiHOG000229584
InParanoidiQ8VYF1
KOiK02877
OMAiERVGHNC
OrthoDBiEOG09360NW9
PhylomeDBiQ8VYF1

Family and domain databases

Gene3Di3.40.1120.10, 1 hit
InterProiView protein in InterPro
IPR024794 Rbsml_L15e_core_dom_sf
IPR000439 Ribosomal_L15e
IPR020925 Ribosomal_L15e_CS
IPR012678 Ribosomal_L23/L15e_core_dom_sf
PANTHERiPTHR11847 PTHR11847, 1 hit
PfamiView protein in Pfam
PF00827 Ribosomal_L15e, 1 hit
SMARTiView protein in SMART
SM01384 Ribosomal_L15e, 1 hit
SUPFAMiSSF54189 SSF54189, 1 hit
PROSITEiView protein in PROSITE
PS01194 RIBOSOMAL_L15E, 1 hit

Sequencei

Sequence statusi: Complete.

Q8VYF1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGAYKYVSEL WRKKQSDVMR FLQRVRCWEY RQQPSIVRLV RPTRPDKARR
60 70 80 90 100
LGYKAKQGFV VYRVRVRRGG RKRPVPKGIV YGKPTNQGVT QLKFQRSKRS
110 120 130 140 150
VAEERAGRKL GGLRVVNSYW LNEDSTYKYY EIILVDPAHN AVRNDPRINW
160 170 180 190 200
ICNPVHKHRE LRGLTSEGKK NRGLRGKGHN NHKNRPSRRA TWKKNNSISL

RRYR
Length:204
Mass (Da):24,239
Last modified:March 1, 2002 - v1
Checksum:iEBD8D4BE0D1B9097
GO

Sequence cautioni

The sequence CAB10520 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB78742 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z97343 Genomic DNA Translation: CAB10520.1 Sequence problems.
AL161546 Genomic DNA Translation: CAB78742.1 Sequence problems.
CP002687 Genomic DNA Translation: AEE83883.1
AY072118 mRNA Translation: AAL59940.1
AY122965 mRNA Translation: AAM67498.1
AY087088 mRNA Translation: AAM64649.1
PIRiC71443
RefSeqiNP_193470.1, NM_117843.4
UniGeneiAt.20009
At.24376
At.71219

Genome annotation databases

EnsemblPlantsiAT4G17390.1; AT4G17390.1; AT4G17390
GeneIDi827451
GrameneiAT4G17390.1; AT4G17390.1; AT4G17390
KEGGiath:AT4G17390

Similar proteinsi

Entry informationi

Entry nameiRL152_ARATH
AccessioniPrimary (citable) accession number: Q8VYF1
Secondary accession number(s): O23582
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: March 1, 2002
Last modified: April 25, 2018
This is version 110 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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