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Protein

Probable WRKY transcription factor 50

Gene

WRKY50

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi107 – 17266WRKYPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • defense response to fungus Source: TAIR
  • jasmonic acid mediated signaling pathway Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable WRKY transcription factor 50
Alternative name(s):
WRKY DNA-binding protein 50
Gene namesi
Name:WRKY50
Ordered Locus Names:At5g26170
ORF Names:T19G15.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

TAIRiAT5G26170.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 173173Probable WRKY transcription factor 50PRO_0000133691Add
BLAST

Proteomic databases

PaxDbiQ8VWQ5.

Expressioni

Gene expression databases

ExpressionAtlasiQ8VWQ5. baseline and differential.

Interactioni

Protein-protein interaction databases

BioGridi17961. 1 interaction.
IntActiQ8VWQ5. 1 interaction.
STRINGi3702.AT5G26170.1.

Structurei

3D structure databases

ProteinModelPortaliQ8VWQ5.
SMRiQ8VWQ5. Positions 111-169.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the WRKY group II-c family.Curated
Contains 1 WRKY DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410J1SM. Eukaryota.
ENOG410YQZM. LUCA.
HOGENOMiHOG000237589.
InParanoidiQ8VWQ5.
OMAiEGSHNHS.
OrthoDBiEOG09360V3C.
PhylomeDBiQ8VWQ5.

Family and domain databases

Gene3Di2.20.25.80. 1 hit.
InterProiIPR003657. WRKY_dom.
[Graphical view]
PfamiPF03106. WRKY. 1 hit.
[Graphical view]
SMARTiSM00774. WRKY. 1 hit.
[Graphical view]
SUPFAMiSSF118290. SSF118290. 1 hit.
PROSITEiPS50811. WRKY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8VWQ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNDADTNLGS SFSDDTHSVF EFPELDLSDE WMDDDLVSAV SGMNQSYGYQ
60 70 80 90 100
TSDVAGALFS GSSSCFSHPE SPSTKTYVAA TATASADNQN KKEKKKIKGR
110 120 130 140 150
VAFKTRSEVE VLDDGFKWRK YGKKMVKNSP HPRNYYKCSV DGCPVKKRVE
160 170
RDRDDPSFVI TTYEGSHNHS SMN
Length:173
Mass (Da):19,291
Last modified:March 1, 2002 - v1
Checksum:i10BACD1561D5F95B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY071847 mRNA. Translation: AAL61857.1.
AC005965 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED93532.1.
RefSeqiNP_197989.2. NM_122518.2.
UniGeneiAt.30864.

Genome annotation databases

EnsemblPlantsiAT5G26170.1; AT5G26170.1; AT5G26170.
GeneIDi832686.
GrameneiAT5G26170.1; AT5G26170.1; AT5G26170.
KEGGiath:AT5G26170.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY071847 mRNA. Translation: AAL61857.1.
AC005965 Genomic DNA. No translation available.
CP002688 Genomic DNA. Translation: AED93532.1.
RefSeqiNP_197989.2. NM_122518.2.
UniGeneiAt.30864.

3D structure databases

ProteinModelPortaliQ8VWQ5.
SMRiQ8VWQ5. Positions 111-169.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi17961. 1 interaction.
IntActiQ8VWQ5. 1 interaction.
STRINGi3702.AT5G26170.1.

Proteomic databases

PaxDbiQ8VWQ5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G26170.1; AT5G26170.1; AT5G26170.
GeneIDi832686.
GrameneiAT5G26170.1; AT5G26170.1; AT5G26170.
KEGGiath:AT5G26170.

Organism-specific databases

TAIRiAT5G26170.

Phylogenomic databases

eggNOGiENOG410J1SM. Eukaryota.
ENOG410YQZM. LUCA.
HOGENOMiHOG000237589.
InParanoidiQ8VWQ5.
OMAiEGSHNHS.
OrthoDBiEOG09360V3C.
PhylomeDBiQ8VWQ5.

Miscellaneous databases

PROiQ8VWQ5.

Gene expression databases

ExpressionAtlasiQ8VWQ5. baseline and differential.

Family and domain databases

Gene3Di2.20.25.80. 1 hit.
InterProiIPR003657. WRKY_dom.
[Graphical view]
PfamiPF03106. WRKY. 1 hit.
[Graphical view]
SMARTiSM00774. WRKY. 1 hit.
[Graphical view]
SUPFAMiSSF118290. SSF118290. 1 hit.
PROSITEiPS50811. WRKY. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiWRK50_ARATH
AccessioniPrimary (citable) accession number: Q8VWQ5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 11, 2003
Last sequence update: March 1, 2002
Last modified: September 7, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.