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Protein

Probable WRKY transcription factor 50

Gene

WRKY50

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi107 – 172WRKYPROSITE-ProRule annotationAdd BLAST66

GO - Molecular functioni

  • DNA binding transcription factor activity Source: TAIR
  • sequence-specific DNA binding Source: InterPro

GO - Biological processi

  • defense response to fungus Source: TAIR
  • jasmonic acid mediated signaling pathway Source: TAIR
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Probable WRKY transcription factor 50
Alternative name(s):
WRKY DNA-binding protein 50
Gene namesi
Name:WRKY50
Ordered Locus Names:At5g26170
ORF Names:T19G15.20
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G26170
TAIRilocus:2179739 AT5G26170

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001336911 – 173Probable WRKY transcription factor 50Add BLAST173

Proteomic databases

PaxDbiQ8VWQ5

Expressioni

Gene expression databases

ExpressionAtlasiQ8VWQ5 baseline and differential

Interactioni

Protein-protein interaction databases

BioGridi17961, 1 interactor
IntActiQ8VWQ5, 1 interactor
STRINGi3702.AT5G26170.1

Structurei

3D structure databases

ProteinModelPortaliQ8VWQ5
SMRiQ8VWQ5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the WRKY group II-c family.Curated

Phylogenomic databases

eggNOGiENOG410J1SM Eukaryota
ENOG410YQZM LUCA
HOGENOMiHOG000237589
InParanoidiQ8VWQ5
OMAiESPCANA
OrthoDBiEOG09360V3C
PhylomeDBiQ8VWQ5

Family and domain databases

Gene3Di2.20.25.80, 1 hit
InterProiView protein in InterPro
IPR003657 WRKY_dom
IPR036576 WRKY_dom_sf
PfamiView protein in Pfam
PF03106 WRKY, 1 hit
SMARTiView protein in SMART
SM00774 WRKY, 1 hit
SUPFAMiSSF118290 SSF118290, 1 hit
PROSITEiView protein in PROSITE
PS50811 WRKY, 1 hit

Sequencei

Sequence statusi: Complete.

Q8VWQ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNDADTNLGS SFSDDTHSVF EFPELDLSDE WMDDDLVSAV SGMNQSYGYQ
60 70 80 90 100
TSDVAGALFS GSSSCFSHPE SPSTKTYVAA TATASADNQN KKEKKKIKGR
110 120 130 140 150
VAFKTRSEVE VLDDGFKWRK YGKKMVKNSP HPRNYYKCSV DGCPVKKRVE
160 170
RDRDDPSFVI TTYEGSHNHS SMN
Length:173
Mass (Da):19,291
Last modified:March 1, 2002 - v1
Checksum:i10BACD1561D5F95B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY071847 mRNA Translation: AAL61857.1
AC005965 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED93532.1
RefSeqiNP_197989.2, NM_122518.3
UniGeneiAt.30864

Genome annotation databases

EnsemblPlantsiAT5G26170.1; AT5G26170.1; AT5G26170
GeneIDi832686
GrameneiAT5G26170.1; AT5G26170.1; AT5G26170
KEGGiath:AT5G26170

Similar proteinsi

Entry informationi

Entry nameiWRK50_ARATH
AccessioniPrimary (citable) accession number: Q8VWQ5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 11, 2003
Last sequence update: March 1, 2002
Last modified: April 25, 2018
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health