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Q8VSD5

- Q8VSD5_SHIFL

UniProt

Q8VSD5 - Q8VSD5_SHIFL

Protein
Submitted name:

ORF169b

Gene

ORF169b

Organism
Shigella flexneri
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (01 Mar 2002)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ORF169bImported
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:ORF169bImported
    Ordered Locus Names:CP0209Imported
    Encoded oniPlasmid pCP301Imported
    Plasmid pINV_F6_M1382Imported
    OrganismiShigella flexneriImported
    Taxonomic identifieri623 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella
    ProteomesiUP000001006: Plasmid pCP301

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-59658N.
    STRINGi198214.CP0209.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3B21X-ray2.01A1-212[»]
    3W30X-ray2.99A/B1-212[»]
    3W31X-ray2.96A1-212[»]
    4IP3X-ray2.30A1-212[»]
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000181429.
    OrthoDBiEOG6NKQZQ.

    Family and domain databases

    InterProiIPR028908. Tox-PL_dom.
    [Graphical view]
    PfamiPF15644. Tox-PL. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8VSD5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MINGVSLQGT AGYEAHTEEG NVNVKKLLES LNSKSLGDMD KDSELAATLQ    50
    KMINPSGGDG NCSGCALHAC MAMLGYGVRE APVPNEISEY MTGFFHRHLE 100
    QIDSEGIVSH PNETYSKFRE RIAENILQNT SKGSVVMISI EQATHWIAGF 150
    NDGEKIMFLD VQTGKGFNLY DPVEKSPDAF VDENSSVQVI HVSDQEFDHY 200
    ANSSSWKSKR LC 212
    Length:212
    Mass (Da):23,341
    Last modified:March 1, 2002 - v1
    Checksum:iB474CCF80FAD884F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF386526 Genomic DNA. Translation: AAL72429.1.
    AY206443 Genomic DNA. Translation: AAP79026.1.
    RefSeqiNP_858342.1. NC_004851.1.

    Genome annotation databases

    EnsemblBacteriaiAAL72429; AAL72429; CP0209.
    GeneIDi1238132.
    KEGGisfl:CP0209.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF386526 Genomic DNA. Translation: AAL72429.1 .
    AY206443 Genomic DNA. Translation: AAP79026.1 .
    RefSeqi NP_858342.1. NC_004851.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3B21 X-ray 2.01 A 1-212 [» ]
    3W30 X-ray 2.99 A/B 1-212 [» ]
    3W31 X-ray 2.96 A 1-212 [» ]
    4IP3 X-ray 2.30 A 1-212 [» ]
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-59658N.
    STRINGi 198214.CP0209.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAL72429 ; AAL72429 ; CP0209 .
    GeneIDi 1238132.
    KEGGi sfl:CP0209.

    Phylogenomic databases

    HOGENOMi HOG000181429.
    OrthoDBi EOG6NKQZQ.

    Family and domain databases

    InterProi IPR028908. Tox-PL_dom.
    [Graphical view ]
    Pfami PF15644. Tox-PL. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157."
      Jin Q., Yuan Z., Xu J., Wang Y., Shen Y., Lu W., Wang J., Liu H., Yang J., Yang F., Zhang X., Zhang J., Yang G., Wu H., Qu D., Dong J., Sun L., Xue Y.
      , Zhao A., Gao Y., Zhu J., Kan B., Ding K., Chen S., Cheng H., Yao Z., He B., Chen R., Ma D., Qiang B., Wen Y., Hou Y., Yu J.
      Nucleic Acids Res. 30:4432-4441(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 301Imported, pCP301 and Plasmid pCP301.
    2. "Comparison of two major forms of the Shigella virulence plasmid pINV: positive selection is a major force driving the divergence."
      Lan R., Stevenson G., Reeves P.R.
      Infect. Immun. 71:6298-6306(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Plasmid: pINV_F6_M1382
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: 301Imported.
      Plasmid: pCP301
    4. "The Shigella flexneri effector OspI deamidates UBC13 to dampen the inflammatory response."
      Sanada T., Kim M., Mimuro H., Suzuki M., Ogawa M., Oyama A., Ashida H., Kobayashi T., Koyama T., Nagai S., Shibata Y., Gohda J., Inoue J., Mizushima T., Sasakawa C.
      Nature 483:623-626(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.01 ANGSTROMS).
    5. "Structural basis for the recognition of Ubc13 by the Shigella flexneri effector OspI."
      Nishide A., Kim M., Takagi K., Himeno A., Sanada T., Sasakawa C., Mizushima T.
      J. Mol. Biol. 425:2623-2631(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.96 ANGSTROMS).
    6. "Structure Analysis of Ubc13 Inactivation."
      Fu P., Jin M., Zhang X., Xu L., Xia Z., Zhu Y.
      Submitted (JAN-2013) to the PDB data bank
      Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS).

    Entry informationi

    Entry nameiQ8VSD5_SHIFL
    AccessioniPrimary (citable) accession number: Q8VSD5
    Secondary accession number(s): Q6XVV4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 1, 2002
    Last sequence update: March 1, 2002
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteomeImported, PlasmidImported

    External Data

    Dasty 3