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Protein
Submitted name:

ORF169b

Gene

ORF169b

Organism
Shigella flexneri
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
ORF169bImported
Gene namesi
Name:ORF169bImported
Encoded oniPlasmid pINV_F6_M1382Imported
OrganismiShigella flexneriImported
Taxonomic identifieri623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi62 ↔ 65

Interactioni

Protein-protein interaction databases

DIPiDIP-59658N.
STRINGi198214.CP0209.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3B21X-ray2.01A1-212[»]
3W30X-ray2.99A/B1-212[»]
3W31X-ray2.96A1-212[»]
4IP3X-ray2.30A1-212[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000181429.
OrthoDBiEOG6NKQZQ.

Family and domain databases

InterProiIPR028908. Tox-PL_dom.
[Graphical view]
PfamiPF15644. Tox-PL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8VSD5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINGVSLQGT AGYEAHTEEG NVNVKKLLES LNSKSLGDMD KDSELAATLQ
60 70 80 90 100
KMINPSGGDG NCSGCALHAC MAMLGYGVRE APVPNEISEY MTGFFHRHLE
110 120 130 140 150
QIDSEGIVSH PNETYSKFRE RIAENILQNT SKGSVVMISI EQATHWIAGF
160 170 180 190 200
NDGEKIMFLD VQTGKGFNLY DPVEKSPDAF VDENSSVQVI HVSDQEFDHY
210
ANSSSWKSKR LC
Length:212
Mass (Da):23,341
Last modified:March 1, 2002 - v1
Checksum:iB474CCF80FAD884F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY206443 Genomic DNA. Translation: AAP79026.1.
RefSeqiWP_000607008.1. NG_035873.1.
YP_009078318.1. NG_035873.1.

Genome annotation databases

EnsemblBacteriaiAAL72429; AAL72429; SF_p0209.
KGY75724; KGY75724; MC63_24415.
KEGGisfl:CP0209.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY206443 Genomic DNA. Translation: AAP79026.1.
RefSeqiWP_000607008.1. NG_035873.1.
YP_009078318.1. NG_035873.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3B21X-ray2.01A1-212[»]
3W30X-ray2.99A/B1-212[»]
3W31X-ray2.96A1-212[»]
4IP3X-ray2.30A1-212[»]
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-59658N.
STRINGi198214.CP0209.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL72429; AAL72429; SF_p0209.
KGY75724; KGY75724; MC63_24415.
KEGGisfl:CP0209.

Phylogenomic databases

HOGENOMiHOG000181429.
OrthoDBiEOG6NKQZQ.

Family and domain databases

InterProiIPR028908. Tox-PL_dom.
[Graphical view]
PfamiPF15644. Tox-PL. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparison of two major forms of the Shigella virulence plasmid pINV: positive selection is a major force driving the divergence."
    Lan R., Stevenson G., Reeves P.R.
    Infect. Immun. 71:6298-6306(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Plasmid: pINV_F6_M1382
  2. "The Shigella flexneri effector OspI deamidates UBC13 to dampen the inflammatory response."
    Sanada T., Kim M., Mimuro H., Suzuki M., Ogawa M., Oyama A., Ashida H., Kobayashi T., Koyama T., Nagai S., Shibata Y., Gohda J., Inoue J., Mizushima T., Sasakawa C.
    Nature 483:623-626(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.01 ANGSTROMS), DISULFIDE BONDS.
  3. "Structural basis for the recognition of Ubc13 by the Shigella flexneri effector OspI."
    Nishide A., Kim M., Takagi K., Himeno A., Sanada T., Sasakawa C., Mizushima T.
    J. Mol. Biol. 425:2623-2631(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.96 ANGSTROMS).
  4. "Structure Analysis of Ubc13 Inactivation."
    Fu P., Jin M., Zhang X., Xu L., Xia Z., Zhu Y.
    Submitted (JAN-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS).

Entry informationi

Entry nameiQ8VSD5_SHIFL
AccessioniPrimary (citable) accession number: Q8VSD5
Secondary accession number(s): Q6XVV4
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: July 22, 2015
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.