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Q8VSD5

- Q8VSD5_SHIFL

UniProt

Q8VSD5 - Q8VSD5_SHIFL

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Protein
Submitted name:

ORF169b

Gene

ORF169b

Organism
Shigella flexneri
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
ORF169bImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:ORF169bImported
ORF Names:SF_p0209Imported
Encoded oniPlasmid pCP301Imported
Plasmid pINV_F6_M1382Imported
OrganismiShigella flexneriImported
Taxonomic identifieri623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella
ProteomesiUP000001006: Plasmid pCP301

Interactioni

Protein-protein interaction databases

DIPiDIP-59658N.
STRINGi198214.CP0209.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3B21X-ray2.01A1-212[»]
3W30X-ray2.99A/B1-212[»]
3W31X-ray2.96A1-212[»]
4IP3X-ray2.30A1-212[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000181429.
OrthoDBiEOG6NKQZQ.

Family and domain databases

InterProiIPR028908. Tox-PL_dom.
[Graphical view]
PfamiPF15644. Tox-PL. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8VSD5-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MINGVSLQGT AGYEAHTEEG NVNVKKLLES LNSKSLGDMD KDSELAATLQ
60 70 80 90 100
KMINPSGGDG NCSGCALHAC MAMLGYGVRE APVPNEISEY MTGFFHRHLE
110 120 130 140 150
QIDSEGIVSH PNETYSKFRE RIAENILQNT SKGSVVMISI EQATHWIAGF
160 170 180 190 200
NDGEKIMFLD VQTGKGFNLY DPVEKSPDAF VDENSSVQVI HVSDQEFDHY
210
ANSSSWKSKR LC
Length:212
Mass (Da):23,341
Last modified:March 1, 2002 - v1
Checksum:iB474CCF80FAD884F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF386526 Genomic DNA. Translation: AAL72429.1.
AY206443 Genomic DNA. Translation: AAP79026.1.
RefSeqiNP_858342.1. NC_004851.1.

Genome annotation databases

EnsemblBacteriaiAAL72429; AAL72429; CP0209.
GeneIDi1238132.
KEGGisfl:CP0209.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF386526 Genomic DNA. Translation: AAL72429.1 .
AY206443 Genomic DNA. Translation: AAP79026.1 .
RefSeqi NP_858342.1. NC_004851.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3B21 X-ray 2.01 A 1-212 [» ]
3W30 X-ray 2.99 A/B 1-212 [» ]
3W31 X-ray 2.96 A 1-212 [» ]
4IP3 X-ray 2.30 A 1-212 [» ]
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

DIPi DIP-59658N.
STRINGi 198214.CP0209.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAL72429 ; AAL72429 ; CP0209 .
GeneIDi 1238132.
KEGGi sfl:CP0209.

Phylogenomic databases

HOGENOMi HOG000181429.
OrthoDBi EOG6NKQZQ.

Family and domain databases

InterProi IPR028908. Tox-PL_dom.
[Graphical view ]
Pfami PF15644. Tox-PL. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157."
    Jin Q., Yuan Z., Xu J., Wang Y., Shen Y., Lu W., Wang J., Liu H., Yang J., Yang F., Zhang X., Zhang J., Yang G., Wu H., Qu D., Dong J., Sun L., Xue Y.
    , Zhao A., Gao Y., Zhu J., Kan B., Ding K., Chen S., Cheng H., Yao Z., He B., Chen R., Ma D., Qiang B., Wen Y., Hou Y., Yu J.
    Nucleic Acids Res. 30:4432-4441(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 301Imported, pCP301 and Plasmid pCP301.
  2. "Comparison of two major forms of the Shigella virulence plasmid pINV: positive selection is a major force driving the divergence."
    Lan R., Stevenson G., Reeves P.R.
    Infect. Immun. 71:6298-6306(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Plasmid: pINV_F6_M1382
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 301Imported.
    Plasmid: pCP301
  4. "The Shigella flexneri effector OspI deamidates UBC13 to dampen the inflammatory response."
    Sanada T., Kim M., Mimuro H., Suzuki M., Ogawa M., Oyama A., Ashida H., Kobayashi T., Koyama T., Nagai S., Shibata Y., Gohda J., Inoue J., Mizushima T., Sasakawa C.
    Nature 483:623-626(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.01 ANGSTROMS), ACTIVE SITE.
  5. "Structural basis for the recognition of Ubc13 by the Shigella flexneri effector OspI."
    Nishide A., Kim M., Takagi K., Himeno A., Sanada T., Sasakawa C., Mizushima T.
    J. Mol. Biol. 425:2623-2631(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.96 ANGSTROMS).
  6. "Structure Analysis of Ubc13 Inactivation."
    Fu P., Jin M., Zhang X., Xu L., Xia Z., Zhu Y.
    Submitted (JAN-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS).

Entry informationi

Entry nameiQ8VSD5_SHIFL
AccessioniPrimary (citable) accession number: Q8VSD5
Secondary accession number(s): Q6XVV4
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: November 26, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteomeImported, PlasmidImported

External Data

Dasty 3