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Protein
Submitted name:

ISSfl3 orfB

Gene

S0382

Organism
Shigella flexneri
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
ISSfl3 orfBImported
Submitted name:
ISSfl4 ORF2Imported
Submitted name:
ISSfl4 ORF2,Transposase and inactivated derivatives,IS66 Orf2 like proteinImported
Gene namesi
Ordered Locus Names:S0382Imported, SF3323Imported
ORF Names:NCTC1_00387Imported, SF_p0212Imported
Encoded oniPlasmid pCP301Imported
OrganismiShigella flexneriImported
Taxonomic identifieri623 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeShigella
ProteomesiUP000001006: Chromosome, UP000001006: Plasmid pCP301, UP000002673: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi198214.SF3323.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222383.
KOiK07484.
OMAiMPEVITL.
OrthoDBiEOG6SFPHH.

Family and domain databases

InterProiIPR008878. Transposase_IS66_Orf2.
[Graphical view]
PfamiPF05717. TnpB_IS66. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8VSD3-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MITLPTGTKI WIIAGITDMR CGFNGLASKV QNTLKDDPFS GHIFVFRGRS
60 70 80 90 100
GKMVKILWAD RDGLCLFAKR LERGRFVWPV TREGKVHLTP AQLSMLLEGI
110
AWPHPKRTER PGIRI
Length:115
Mass (Da):13,027
Last modified:March 1, 2002 - v1
Checksum:iF2AC5DA40C7377D4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF386526 Genomic DNA. Translation: AAL72465.1.
AE005674 Genomic DNA. Translation: AAN44786.1.
AE014073 Genomic DNA. Translation: AAP15910.1.
LM651928 Genomic DNA. Translation: CDX05668.1.
RefSeqiNP_709079.1. NC_004337.2.
NP_836104.1. NC_004741.1.
NP_858345.1. NC_004851.1.

Genome annotation databases

EnsemblBacteriaiAAL72465; AAL72465; SF_p0212.
AAN44786; AAN44786; SF3323.
AAP15910; AAP15910; S0382.
GeneIDi1027029.
1076821.
1238168.
KEGGisfl:CP0212.
sfl:SF3323.
sfx:S0382.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF386526 Genomic DNA. Translation: AAL72465.1.
AE005674 Genomic DNA. Translation: AAN44786.1.
AE014073 Genomic DNA. Translation: AAP15910.1.
LM651928 Genomic DNA. Translation: CDX05668.1.
RefSeqiNP_709079.1. NC_004337.2.
NP_836104.1. NC_004741.1.
NP_858345.1. NC_004851.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi198214.SF3323.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAL72465; AAL72465; SF_p0212.
AAN44786; AAN44786; SF3323.
AAP15910; AAP15910; S0382.
GeneIDi1027029.
1076821.
1238168.
KEGGisfl:CP0212.
sfl:SF3323.
sfx:S0382.

Phylogenomic databases

HOGENOMiHOG000222383.
KOiK07484.
OMAiMPEVITL.
OrthoDBiEOG6SFPHH.

Family and domain databases

InterProiIPR008878. Transposase_IS66_Orf2.
[Graphical view]
PfamiPF05717. TnpB_IS66. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157."
    Jin Q., Yuan Z., Xu J., Wang Y., Shen Y., Lu W., Wang J., Liu H., Yang J., Yang F., Zhang X., Zhang J., Yang G., Wu H., Qu D., Dong J., Sun L., Xue Y.
    , Zhao A., Gao Y., Zhu J., Kan B., Ding K., Chen S., Cheng H., Yao Z., He B., Chen R., Ma D., Qiang B., Wen Y., Hou Y., Yu J.
    Nucleic Acids Res. 30:4432-4441(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 301Imported, 301 / Serotype 2aImported, pCP301 and Plasmid pCP301.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 2457TImported and ATCC 700930 / 2457T / Serotype 2aImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 301Imported.
    Plasmid: pCP301
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 301Imported.
  5. Aslett A.Martin., De Silva Nishadi
    Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ8VSD3_SHIFL
AccessioniPrimary (citable) accession number: Q8VSD3
Secondary accession number(s): Q7C2Y2, Q83JC8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: February 4, 2015
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.