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Protein
Submitted name:

AttJ

Gene

attJ

Organism
Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationUniRule annotationSAAS annotation

Keywords - Ligandi

DNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
AttJImported
Gene namesi
Name:attJImported
OrganismiRhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)Imported
Taxonomic identifieri358 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3MQ0X-ray1.79A/B1-275[»]
ProteinModelPortaliQ8VPD8.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8VPD8.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini26 – 8762HTH iclR-type DNA-bindingInterPro annotationAdd
BLAST
Domaini88 – 270183IclR-ED (iclR effector binding)InterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH iclR-type DNA-binding domain.UniRule annotation

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.450.40. 1 hit.
InterProiIPR029016. GAF_dom-like.
IPR014757. Tscrpt_reg_IclR_C.
IPR005471. Tscrpt_reg_IclR_N.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF09339. HTH_IclR. 1 hit.
PF01614. IclR. 1 hit.
[Graphical view]
SMARTiSM00346. HTH_ICLR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEiPS51077. HTH_ICLR. 1 hit.
PS51078. ICLR_ED. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8VPD8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGQRGQVCQG KCMAEDQQSS QISDTVPALR RAVRILDLVA GSPRDLTAAE
60 70 80 90 100
LTRFLDLPKS SAHGLLAVMT ELDLLARSAD GTLRIGPHSL RWANGFLSHL
110 120 130 140 150
DIVSTFNDHL AQRHDLDPYT VTLTVREGGE VVYIGCRNSA QPLGHTFRIG
160 170 180 190 200
MRLPAPFTAT GKILLSDLGP GELRMLFSQF PQPLTSRSVA GLSQLEEELA
210 220 230 240 250
LTRARGYSID DGQIREGMLC IGAAIRDYSG AASAGIAISL IRSEASDEKI
260 270
AYLGEELRTT ANALSEKLGY RSQKD
Length:275
Mass (Da):29,780
Last modified:March 1, 2002 - v1
Checksum:iA230B026080841D0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY052389 Genomic DNA. Translation: AAL13072.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY052389 Genomic DNA. Translation: AAL13072.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3MQ0X-ray1.79A/B1-275[»]
ProteinModelPortaliQ8VPD8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiQ8VPD8.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.450.40. 1 hit.
InterProiIPR029016. GAF_dom-like.
IPR014757. Tscrpt_reg_IclR_C.
IPR005471. Tscrpt_reg_IclR_N.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF09339. HTH_IclR. 1 hit.
PF01614. IclR. 1 hit.
[Graphical view]
SMARTiSM00346. HTH_ICLR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF55781. SSF55781. 1 hit.
PROSITEiPS51077. HTH_ICLR. 1 hit.
PS51078. ICLR_ED. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Zhang H.-B., Zhang L.-H.
    Submitted (AUG-2001) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A6Imported.
  2. "Genetic control of quorum-sensing signal turnover in Agrobacterium tumefaciens."
    Zhang H.B., Wang L.H., Zhang L.H.
    Proc. Natl. Acad. Sci. U.S.A. 99:4638-4643(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A6Imported.
  3. "The Agrobacterium tumefaciens transcription factor BlcR is regulated via oligomerization."
    Pan Y., Fiscus V., Meng W., Zheng Z., Zhang L.H., Fuqua C., Chen L.
    J. Biol. Chem. 286:20431-20440(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.79 ANGSTROMS).

Entry informationi

Entry nameiQ8VPD8_RHIRD
AccessioniPrimary (citable) accession number: Q8VPD8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2002
Last sequence update: March 1, 2002
Last modified: February 17, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.